R/fq.R

In mcieslik-mctp/gscars:

function() {
    setwd("/mctp/users/mcieslik/proj/code/gscars/gscars")
    countBarcodes("inst/extdata/test_1.fq", "B", "inst/extdata/4M-with-alts-february-2016.txt")

    countBarcodes("inst/extdata/test_2.fq", "B", "inst/extdata/4M-with-alts-february-2016.txt")    



    
    library(devtools)
    setwd("/mctp/users/mcieslik/proj/code/gscars/gscars")
    load_all()
    preprocessFastq("B", "inst/extdata/test_1.fq", "inst/extdata/test_2.fq", "1.fq", "2.fq")
    preprocessFastq("B", "1.fq", "2.fq", "tfq1", "tfq2")

}