Description Usage Arguments Value Examples
View source: R/exported_functions.R
Assign markers to an LG based on consensus between two parents.
1 2 | consensus_LG_assignment(P1_assigned, P2_assigned, LG_number = 5, ploidy = 4,
consensus_file = NULL, log = NULL)
|
P1_assigned |
A marker assignment file of the first parent. Should contain the number of linkages per LG per marker. |
P2_assigned |
A marker assignment file of the second parent. Should be the same markertype as first parent and contain the number of linkages per LG per marker. |
LG_number |
Number of linkage groups (chromosomes). |
ploidy |
Ploidy level of plant species. |
consensus_file |
Filename of consensus output. No output is written if NULL. |
log |
Character string specifying the log filename to which standard output should be written. If NULL log is send to stdout. |
Returns a list containing the following components:
P1_assigned |
A (modified) marker assignment matrix of the first parent. |
P2_assigned |
A (modified) marker assignment matrix of the second parent. |
1 2 | data("P1_SxS_Assigned", "P2_SxS_Assigned_2")
SxS_Assigned_list <- consensus_LG_assignment(P1_SxS_Assigned, P2_SxS_Assigned_2, LG_number=5)
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