PROseq-data: PRO-seq data from Drosophila S2 cells

PROseq-dataR Documentation

PRO-seq data from Drosophila S2 cells

Description

PRO-seq data from chromosome 4 of Drosophila S2 cells.

Usage

data(PROseq)

data(PROseq_paired)

Format

PROseq is a disjoint GRanges object with 47380 ranges and 1 metadata column, "score", which contains coverage of PRO-seq read 3' ends.

PROseq_paired is a GRanges object containing 53179 ranges and 1 metadata column, "score", which indicates the number of identically-mapped reads (i.e. they share the same 5' and 3' ends).

An object of class GRanges of length 53179.

Source

GEO Accession GSM1032758, run SRR611828.

References

Hojoong Kwak, Nicholas J. Fuda, Leighton J. Core, John T. Lis (2013). Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing. Science 339(6122): 950–953. https://doi.org/10.1126/science.1229386


mdeber/BRGenomics documentation built on Aug. 3, 2024, 3:43 a.m.