PROseq-data: PRO-seq data from Drosophila S2 cells
In mdeber/BRGenomics: Tools for the Efficient Analysis of High-Resolution Genomics Data
PROseq-data R Documentation
PRO-seq data from Drosophila S2 cells
Description
PRO-seq data from chromosome 4 of Drosophila S2 cells.
Usage
data(PROseq)
data(PROseq_paired)
Format
PROseq is a disjoint GRanges object with 47380 ranges and 1
metadata column, "score", which contains coverage of PRO-seq read 3' ends.
PROseq_paired is a GRanges object containing 53179 ranges and 1
metadata column, "score", which indicates the number of identically-mapped
reads (i.e. they share the same 5' and 3' ends).
An object of class GRanges of length 53179.
Source
GEO Accession GSM1032758, run SRR611828.
References
Hojoong Kwak, Nicholas J. Fuda, Leighton J. Core, John T. Lis
(2013). Precise Maps of RNA Polymerase Reveal How Promoters Direct
Initiation and Pausing. Science 339(6122): 950–953.
https://doi.org/10.1126/science.1229386
mdeber/BRGenomics documentation built on Aug. 3, 2024, 3:43 a.m.
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| PROseq-data | R Documentation |
PRO-seq data from Drosophila S2 cells
Description
PRO-seq data from chromosome 4 of Drosophila S2 cells.
Usage
data(PROseq)
data(PROseq_paired)
Format
PROseq is a disjoint GRanges object with 47380 ranges and 1
metadata column, "score", which contains coverage of PRO-seq read 3' ends.
PROseq_paired is a GRanges object containing 53179 ranges and 1
metadata column, "score", which indicates the number of identically-mapped
reads (i.e. they share the same 5' and 3' ends).
An object of class GRanges of length 53179.
Source
GEO Accession GSM1032758, run SRR611828.
References
Hojoong Kwak, Nicholas J. Fuda, Leighton J. Core, John T. Lis (2013). Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing. Science 339(6122): 950–953. https://doi.org/10.1126/science.1229386
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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