saveSBML: Saves an SBMLR object to an SBML file.

In mdnestor/SBMLR: SBML-R Interface and Analysis Tools

Description

This function converts a class SBMLR model object into an SBML level 2 version 1 file.

Usage

saveSBML(model,filename)

Arguments

model	The S3 SBMLR model object.
filename	The name of the SBML file

Details

The output file is SBML level 2.

Value

No value returned.

Warning

SBML events and function definitions are NOT implemented.

Note

The SBML file is written incrementally, rather than first built as a DOM in R and then saved using xmlSave.

Author(s)

Tom Radivoyevitch

References

Radivoyevitch, T. A two-way interface between limited Systems Biology Markup Language and R. BMC Bioinformatics 5, 190 (2004).

See Also

saveSBMLR

Examples

library(SBMLR)
curtoR=readSBMLR(file.path(system.file(package="SBMLR"), "models/curto.r"))  
saveSBML(curtoR,"curtoR.xml") 
curtoX=readSBML("curtoR.xml")  
curtoX==curtoR
summary(curtoR)
unlink("curtoR.xml")

mdnestor/SBMLR documentation built on Aug. 28, 2020, 12:06 a.m.