API for mdraminski/CytoMeth
CytoMeth
| Global functions | |
|---|---|
| CytoMeth | Source code |
| CytoMethInfo | Source code |
| CytoMethSingleSample | Source code |
| add_file_prefix | Source code |
| basename_noext | Source code |
| basename_sample | Source code |
| bssnper_to_bed | Source code |
| checkFormat | Source code |
| checkLog | Source code |
| checkRequiredFiles | Source code |
| checkRequiredSettings | Source code |
| checkRequiredTools | Source code |
| command_BSSnper | Source code |
| compareMethData | Source code |
| convertMethResult | Source code |
| createAllQCSummary | Source code |
| createResultDirs | Source code |
| f2si | Source code |
| fileExt | Source code |
| fileRemoveIfExists | Source code |
| filterMethResult | Source code |
| fixMachineConfig | Source code |
| getBSMAPIndexInterval | Source code |
| getCovSummary | Source code |
| getLinesNumber | Source code |
| getMethylDataHeader | Source code |
| getRVer | Source code |
| getRefChr | Source code |
| getSampleChr | Source code |
| getSampleQCSummary | Source code |
| get_conversion_efficiency | Source code |
| makeDataFrame | Source code |
| methratio_to_bed | Source code |
| methyl_result_info | Source code |
| openPlotFile | Source code |
| plotBetaValuesSummary | Source code |
| plotCntCommonCpG | Source code |
| plotCpGAnnotation | Source code |
| plotCpGGenomAnnotation | Source code |
| plotCpGIslandsAnnotation | Source code |
| plotMethLevels | Source code |
| plotMethStats | Source code |
| plotMethStatsSummary | Source code |
| plotSingleMethStats | Source code |
| plotSitesCpG | Source code |
| plotSitesNonCpG | Source code |
| qc2dataframe | Source code |
| readAllQCSummary | Source code |
| readCondaPath | Source code |
| readConfig | Source code |
| readMethData | Source code |
| readMethResult | Source code |
| readPython2Path | Source code |
| runSystemCommand | Source code |
| run_BSMAP | Source code |
| run_BSSnper | Source code |
| run_BSSnperOld | Source code |
| run_ClipOverlap | Source code |
| run_DepthOfCoverage | Source code |
| run_FastQC | Source code |
| run_FilterBAM | Source code |
| run_MappingMetrics | Source code |
| run_Methratio | Source code |
| run_PanelIntersect | Source code |
| run_RemoveDuplicates | Source code |
| run_Trimmomatic | Source code |
| run_seqtk | Source code |
| si2f | Source code |
| skipProcess | Source code |
| specify_decimal | Source code |
| wrap_files | Source code |
