mgpCellMarkers: Marker Genes for the Marker Gene Profile method
In meconsens/CellTyPETool: Facilitates Deconvolution of Bulk Tissue RNAseq Data for Disease Phenotype Analysis
Description
Usage
Format
Source
Examples
Description
Marker Genes from the BRETIGEA package reformatted for use in the Marker Gene Profile method
Usage
1
Format
A nested list with 6 sub-lists of marker genes for brain cells: astrocyte, endothelial, microglia, neuron, oligodnedrocyte and oligodendrocyte precursor cells:
- ast
Top 50 astrocyte marker genes.
- end
Top 50 astrocyte marker genes.
- mic
Top 50 microglia marker genes.
- neu
Top 50 neuron marker genes.
- oli
Top 50 oligodendrocyte marker genes.
- opc
Top 50 oligodendrocyte precursor cell marker genes.
Source
BRETIGEA
Examples
1
2
3
4
## Not run:
mgpCellMarkers
## End(Not run)
meconsens/CellTyPETool documentation built on Jan. 1, 2021, 9:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source Examples
Description
Marker Genes from the BRETIGEA package reformatted for use in the Marker Gene Profile method
Usage
1 |
Format
A nested list with 6 sub-lists of marker genes for brain cells: astrocyte, endothelial, microglia, neuron, oligodnedrocyte and oligodendrocyte precursor cells:
- ast
Top 50 astrocyte marker genes.
- end
Top 50 astrocyte marker genes.
- mic
Top 50 microglia marker genes.
- neu
Top 50 neuron marker genes.
- oli
Top 50 oligodendrocyte marker genes.
- opc
Top 50 oligodendrocyte precursor cell marker genes.
Source
BRETIGEA
Examples
1 2 3 4 | ## Not run:
mgpCellMarkers
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.