runORF: Run OncoRegimenFinder

In meerapatelmd/OncoRegimenFinder: Derive Oncology Treatment Regimens from the OMOP CDM

Description

This function runs OncoRegimenFinder from start to finish.

Usage

runORF(
  conn,
  cdmDatabaseSchema,
  writeDatabaseSchema,
  vocabularyTable,
  drugExposureIngredientTable,
  cohortTable,
  regimenTable,
  regimenIngredientTable,
  verbose = TRUE,
  progressBar = TRUE,
  renameTable = FALSE
)

Arguments

conn	a database connection object
cdmDatabaseSchema	OMOP CDM source schema
writeDatabaseSchema	schema to write to
vocabularyTable	Vocabulary Table
drugExposureIngredientTable	Drug Exposure Table
cohortTable	Cohort Table
regimenTable	Regimen Table
regimenIngredientTable	Regimen Ingredient Table
verbose	If TRUE, prints details of the operations being performed as they are being executed.
progressBar	If TRUE, prints a progress bar to the console that tracks the write table process.

See Also

progress_bar typewrite createVocabTable,buildIngredientExposuresTable,buildCohortRegimenTable,processRegimenTable,createRegimenIngrTable

meerapatelmd/OncoRegimenFinder documentation built on Jan. 1, 2021, 9:25 a.m.