Man pages for meerapatelmd/amphora
Manipulate Clinical Ontologies
| amphora-package | amphora: Manipulate Clinical Ontologies |
| antineoplastics_annotation | Antineoplastics Annotation |
| check_concept_id | Check Concept Id |
| check_conn | Check Connection |
| check_conn_type | Check Connection Type |
| create_class_hierarchy_cellfie | Create Class Hierarchy Cellfie |
| create_classification | FUNCTION_TITLE |
| excel_hemonc_class_hierarchy | Write Excel of HemOnc's Class Hierarchy for Protege |
| get_concept | Lookup a Concept Id |
| hemonc_triples | Convert OMOP HemOnc to Triplets |
| install_robot | Install Robot |
| instantiate_standard_library | Creating the Target Standard Library from OMOP Concepts |
| lookup_concept_id | Lookup a Concept Id |
| lookup_synonyms | Lookup Synonyms |
| lookup_top_classes | Get the Top Classes |
| MOMOP_TABLES | mOMOP Tables |
| omop_concept-class | OMOP Concept Class (S4) |
| plot_atc_1st_class | Plot ATC 1st |
| plot_atc_classification | Plot an ATC Preview as a Tree Diagram |
| plot_loinc_classification | Plot a LOINC Class |
| preview_atc_classification | Preview an ATC Class's Descendants |
| preview_concept_classification | Preview Concept Lineage |
| preview_hemonc_classification | Preview a HemOnc Class's Descendants |
| preview_loinc_classification | Preview LOINC Class Descendants |
| print_hemonc_class_hierarchy | Print Class Hierarchy for Protege |
| queryAthena | Query the Athena Postgres Database |
| robot_convert | Convert an Ontology Format |
| sendAthena | Send a SQL Statement |
| sl_add_classification | FUNCTION_TITLE |
| sl_add_new_concept | FUNCTION_TITLE |
| sl_add_omop_concept | FUNCTION_TITLE |
| source_add_concept | FUNCTION_TITLE |
| source_add_map_to_target | FUNCTION_TITLE |
| standard_library_concept-class | Standard Library Concept Class (S4) |
| UPTODATE_TABLES | UpToDate Drug Tables |
