create_classification: FUNCTION_TITLE

In meerapatelmd/amphora: Manipulate Clinical Ontologies

Description

FUNCTION_DESCRIPTION

Usage

create_classification(
  class_hierarchy = list(`CANCER ANATOMY` = c("NAACCR_Laterality"), `CANCER CLINICAL
    PERFORMANCE` = c("ICDO3_Behavior"), `CANCER GRADES` = c("CNS_Tumors"), `CANCER
    STAGES` = c("AnnArbor_HodgkinLymphoma", "Lugano_NonHodgkinLymphoma",
    "NAACCR_Clinical_Stage", "NAACCR_Path_Stage"), `CANCER TYPE` = c("ICD10",
    "ICDO3_Histology", "ICDO3_Top_Topography", "ICDO3_Topography"), DRUGS =
    c("BY RXNORM INGREDIENT/GLUCOCORTICOID",
    "BY RXNORM INGREDIENT/IMMUNOMODULATOR_IMIDE",
    "BY RXNORM INGREDIENT/IMMUNOMODULATOR_TNFa_INHIBITOR",     
    "BY RXNORM INGREDIENT/IMMUNOMODULATOR", "BY RXNORM INGREDIENT/NSAID",
    "BY RXNORM INGREDIENT/STATIN", "BY RXNORM INGREDIENT/VASOPRESSOR"), LABS =
    c("BLEEDING_TIME", "BLOOD_GASES", "BLOOD_TYPE", "CBC", "CREATINE_KINASE",
    "DIFFERENTIAL", "IMMUNOGLOBULIN_PANEL", "INFECTIOUS_DISEASE_DNA",
    "INFECTIOUS_DISEASE_RNA", "LACTATE_DEHYDROGENASE", "LIPID_PANEL", "METABOLIC_PANEL",
    "SINGLE_ORDER_LABS", "SPECIMEN_TYPE")),
  conn,
  standard_library_schema,
  verbose = TRUE,
  render_sql = TRUE,
  render_only = FALSE
)

Arguments

class_hierarchy	PARAM_DESCRIPTION, Default: list(CANCER ANATOMY = c("NAACCR_Laterality"), CANCER CLINICAL PERFORMANCE = c("ICDO3_Behavior"), CANCER GRADES = c("CNS_Tumors"), CANCER STAGES = c("AnnArbor_HodgkinLymphoma", "Lugano_NonHodgkinLymphoma", "NAACCR_Clinical_Stage", "NAACCR_Path_Stage"), CANCER TYPE = c("ICD10", "ICDO3_Histology", "ICDO3_Top_Topography", "ICDO3_Topography"), DRUGS = c("BY RXNORM INGREDIENT/GLUCOCORTICOID", "BY RXNORM INGREDIENT/IMMUNOMODULATOR_IMIDE", "BY RXNORM INGREDIENT/IMMUNOMODULATOR_TNFa_INHIBITOR", "BY RXNORM INGREDIENT/IMMUNOMODULATOR", "BY RXNORM INGREDIENT/NSAID", "BY RXNORM INGREDIENT/STATIN", "BY RXNORM INGREDIENT/VASOPRESSOR"), LABS = c("BLEEDING_TIME", "BLOOD_GASES", "BLOOD_TYPE", "CBC", "CREATINE_KINASE", "DIFFERENTIAL", "IMMUNOGLOBULIN_PANEL", "INFECTIOUS_DISEASE_DNA", "INFECTIOUS_DISEASE_RNA", "LACTATE_DEHYDROGENASE", "LIPID_PANEL", "METABOLIC_PANEL", "SINGLE_ORDER_LABS", "SPECIMEN_TYPE"))
conn	PARAM_DESCRIPTION
standard_library_schema	PARAM_DESCRIPTION
verbose	PARAM_DESCRIPTION, Default: TRUE
render_sql	PARAM_DESCRIPTION, Default: TRUE
render_only	PARAM_DESCRIPTION, Default: FALSE

Details

DETAILS

Value

OUTPUT_DESCRIPTION

See Also

UUIDgenerate append_table tibble

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

meerapatelmd/amphora documentation built on Feb. 5, 2021, 12:53 a.m.