pkg_args: Run Functions

In meerapatelmd/metathesaurus: Setup UMLS Metathesaurus

Run Functions

Description

These functions setup the instance of the given DBMS. All SQL Statements that fail to execute are printed back in the console at the conclusion of execution. It is important to note that the schemas are dropped and rewritten with the run and all present tables will be lost.

Arguments

conn	Database connection via DatabaseConnector.
conn_fun	Instead of supplying of a direct database connection, an expression can be supplied that automatically connects and disconnects the connection once the function is run.
schema	For Postgres executions only, the schema to write all the tables to, Default: 'umls'
rrf_dir	Path to directory to the RRF Files either unpackaged by direct download or produced by Metamorphosys
mrconso_only	Setup only the MRCONSO Table? Default: FALSE
omop_only	Setup the MRCONSO, MRHIER, MRMAP, MRSMAP, MRSAT, AND MRREL Tables only? Default: FALSE
english_only	Setup only the ENG Tables? Default: TRUE

meerapatelmd/metathesaurus documentation built on May 23, 2022, 7:41 a.m.