Files in meerapatelmd/setupMetathesaurus
Setup UMLS Metathesaurus
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/crosswalk.R
R/hierarchy.R
R/metathesaurus-package.R
R/mth_docs.R
R/pg-internals.R
R/pkg_args.R
R/run_setup.R
R/rxnorm_map.R
R/utils-render.R
R/utils-typewrite.R
R/utils.R
README.md
_pkgdown.yml
construction_zone/medallion.R
doc/MySQL.R
doc/MySQL.Rmd
doc/MySQL.html
doc/MySQLSetupandMaintenance.R
doc/MySQLSetupandMaintenance.Rmd
doc/MySQLSetupandMaintenance.html
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/SUPPORT.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Version-2021AA-Metadata.html
docs/articles/Version-2021AA-Metadata_files/crosstalk-1.1.1/css/crosstalk.css
docs/articles/Version-2021AA-Metadata_files/crosstalk-1.1.1/js/crosstalk.js
docs/articles/Version-2021AA-Metadata_files/crosstalk-1.1.1/js/crosstalk.js.map
docs/articles/Version-2021AA-Metadata_files/crosstalk-1.1.1/js/crosstalk.min.js
docs/articles/Version-2021AA-Metadata_files/crosstalk-1.1.1/js/crosstalk.min.js.map
docs/articles/Version-2021AA-Metadata_files/datatables-binding-0.18/datatables.js
docs/articles/Version-2021AA-Metadata_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/Version-2021AA-Metadata_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/Version-2021AA-Metadata_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/Version-2021AA-Metadata_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/css/buttons.dataTables.min.css
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/js/buttons.colVis.min.js
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/js/buttons.flash.min.js
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/js/buttons.html5.min.js
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/js/buttons.print.min.js
docs/articles/Version-2021AA-Metadata_files/dt-ext-buttons-1.10.20/js/dataTables.buttons.min.js
docs/articles/Version-2021AA-Metadata_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/Version-2021AA-Metadata_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/Version-2021AA-Metadata_files/jquery-3.5.1/jquery.js
docs/articles/Version-2021AA-Metadata_files/jquery-3.5.1/jquery.min.js
docs/articles/Version-2021AA-Metadata_files/jquery-3.5.1/jquery.min.map
docs/articles/Version-2021AA-Metadata_files/jszip-1.10.20/jszip.min.js
docs/articles/Version-2021AA-Metadata_files/nouislider-7.0.10/jquery.nouislider.min.css
docs/articles/Version-2021AA-Metadata_files/nouislider-7.0.10/jquery.nouislider.min.js
docs/articles/Version-2021AA-Metadata_files/pdfmake-1.10.20/pdfmake.js
docs/articles/Version-2021AA-Metadata_files/pdfmake-1.10.20/vfs_fonts.js
docs/articles/Version-2021AA-Metadata_files/selectize-0.12.0/selectize.bootstrap3.css
docs/articles/Version-2021AA-Metadata_files/selectize-0.12.0/selectize.min.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/MRXNS_ENG_def.html
docs/reference/MRXNW_ENG_def.html
docs/reference/MRXW_def.html
docs/reference/Rplot001.png
docs/reference/add_indexes.html
docs/reference/all_mth_field_definitions.html
docs/reference/copyPg.html
docs/reference/copy_rrfs.html
docs/reference/ddlMeta.html
docs/reference/ddl_tables.html
docs/reference/documentation_scraping_functions.html
docs/reference/executeSQL.html
docs/reference/field_annotation.html
docs/reference/figures/apple-touch-icon-120x120.png
docs/reference/figures/apple-touch-icon-152x152.png
docs/reference/figures/apple-touch-icon-180x180.png
docs/reference/figures/apple-touch-icon-60x60.png
docs/reference/figures/apple-touch-icon-76x76.png
docs/reference/figures/apple-touch-icon.png
docs/reference/figures/favicon-16x16.png
docs/reference/figures/favicon-32x32.png
docs/reference/figures/favicon.ico
docs/reference/figures/logo.png
docs/reference/index.html
docs/reference/loadMeta.html
docs/reference/load_mrconso.html
docs/reference/metamorphoSys.html
docs/reference/mrconso_field_definitions.html
docs/reference/mth_data_definition_functions.html
docs/reference/mth_fields_to_tables.html
docs/reference/mth_file_description_functions.html
docs/reference/pipe.html
docs/reference/pkg_args.html
docs/reference/reset_schema.html
docs/reference/rrfToCsv.html
docs/reference/runIndices.html
docs/reference/sab_annotation.html
docs/reference/scrape_field_value_annotations.html
docs/reference/scrape_vocabulary_annotations.html
docs/reference/setup_mrconso_sab_subsets.html
docs/reference/setup_mysql_mth.html
docs/reference/setup_pg_mth.html
docs/reference/sqlsplit.html
docs/reference/testCopy.html
docs/reference/view_readable_table_names.html
docs/reference/write_mrconso_sab_table.html
inst/sql/017: UMLS Metathesaurus Neo4j Version 4.0.Rmd
inst/sql/copy.sql
inst/sql/pg.sql
inst/sql/postprocess/02_plr_rxmap.sql
inst/sql/postprocess/umls_class/00_functions.sql
inst/sql/postprocess/umls_class/01_create_log_tables.sql
inst/sql/postprocess/umls_class/02_copy_mrhier_table.sql
inst/sql/postprocess/umls_class/03_write_lookups.sql
inst/sql/postprocess/umls_class/04_parse_ptr.sql
inst/sql/postprocess/umls_class/05_snomed_subset.sql
inst/sql/postprocess/umls_class/06_add_leafs.sql
inst/sql/postprocess/umls_class/07_pivot.sql
inst/sql/postprocess/umls_class/README.md
inst/sql/snomedct_us.sql
logo.jpg
logo.png
man/add_indexes.Rd
man/all_umls_field_definitions.Rd
man/copy_rrfs.Rd
man/crosswalk_sabs.Rd
man/ddl_tables.Rd
man/field_annotation.Rd
man/figures/apple-touch-icon-120x120.png
man/figures/apple-touch-icon-152x152.png
man/figures/apple-touch-icon-180x180.png
man/figures/apple-touch-icon-60x60.png
man/figures/apple-touch-icon-76x76.png
man/figures/apple-touch-icon.png
man/figures/favicon-16x16.png
man/figures/favicon-32x32.png
man/figures/favicon.ico
man/figures/logo.png
man/get_rxnorm_ingredient_map.Rd
man/get_rxnorm_map.Rd
man/get_rxnorm_tty_lookup.Rd
man/metathesaurus-package.Rd
man/mrconso_field_definitions.Rd
man/mth_fields_to_tables.Rd
man/pipe.Rd
man/pkg_args.Rd
man/read_rxnorm_paths.Rd
man/reset_schema.Rd
man/run_postprocessing.Rd
man/run_setup.Rd
man/sab_annotation.Rd
man/setup_crosswalk_schema.Rd
man/setup_rxmap.Rd
man/sqlsplit.Rd
man/umls_data_definition_functions.Rd
man/view_readable_table_names.Rd
man/write_crosswalk_table.Rd
man/write_rxclass_table.Rd
man/write_rxnorm_all_maps.Rd
man/write_rxnorm_ingredient_map.Rd
man/write_rxnorm_map.Rd
man/write_rxnorm_path_lookup.Rd
man/write_rxnorm_tty_lookup.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
setupMetathesaurus.Rproj
vignettes/.gitignore
