In meerapatelmd/setupMetathesaurus: Setup UMLS Metathesaurus

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

Setup

library(setupMetathesaurus)

DDL

ddlMeta(dbname = "umls",
        username = Sys.getenv("umls_username"),
        password = Sys.getenv("umls_password"))

Load

Time Estimates ~15-20 minutes

loadMeta(path = "~/Desktop/2020AA/META",
         username = Sys.getenv("umls_username"),
         password = Sys.getenv("umls_password"))

Indices

Time Estimate: ~30 minutes

runIndices(dbname = "umls",
        username = Sys.getenv("umls_username"),
        password = Sys.getenv("umls_password"))

meerapatelmd/setupMetathesaurus documentation built on May 25, 2022, 6:19 a.m.