run_setup: Load RxNorm Monthly Release into Postgres

In meerapatelmd/setupRxNorm: RxNorm and RxClass Postgres Database Management

Load RxNorm Monthly Release into Postgres

Description

The CSV files downloaded from https://www.nlm.nih.gov/research/umls/rxnorm/docs/rxnormfiles.html are loaded into Postgres.

Usage

run_setup(
  conn,
  conn_fun = "pg13::local_connect()",
  schema = "rxnorm",
  rrf_path,
  rxrel_tables = c(""),
  rxtra_tables = c("rxnorm_validity_status"),
  verbose = TRUE,
  render_sql = TRUE,
  render_only = FALSE,
  checks = c("conn_status", "conn_type"),
  log_schema = "public",
  log_table_name = "setup_rxnorm_log",
  log_release_date
)

Arguments

conn	Connection to a Postgres database.
schema	Target schema for the RxNorm load, Default: 'rxnorm'.
rrf_path	Path to the unpacked RxNorm files.
rxrel_tables	(Optional) Which RxRel schema tables to process for this run?
rxtra_tables	(Optional) Which RxTra schema tables to process for this run?
log_schema	Schema for the table that logs the process, Default: 'public'
log_table_name	Name of log table, Default: 'setup_rxnorm_log'
log_release_date	(Required) RxNorm Monthly Release Date.

meerapatelmd/setupRxNorm documentation built on Sept. 15, 2022, 9:25 a.m.