Pruning_function: RAREsim

In meganmichelle/RAREsim_package: Simulation of Rare Variant Genetic Data

Description

Simulate rare variant genetic data

Simulate rare variant genetic data

Usage

Pruning_function(hap_file_name, MAC, expected, sed_or_gsed = NULL)

Pruning_function(hap_file_name, MAC, expected, sed_or_gsed = NULL)

Arguments

hap_file_name	Name of the haplotype file to prune (gzipped: end in .gz)
MAC	vector of allele count per variant that corresponds with the haplotype file
expected	dataframe of expected number of variants per bin - as well as bin boundaries
sed_or_gsed	Specify if gsed is loaded onto computer instead of sed

Value

Number of variants pruned

Number of variants pruned

Author(s)

Megan M Null, [e-mail]

Megan M Null, [e-mail]

meganmichelle/RAREsim_package documentation built on Nov. 17, 2020, 8:47 p.m.