README.md

In mehrankr/KeggPA: Kegg Human Pathway Analysis

KeggPA

Kegg pathway annotation database overrepresentation analysis by Fisher's exact test.

This R package requires you to provide a pathway annotation dataset with the following columns:

Pathway.ID | Entrez | HGNC | Name.Pathway

path:hsa00010 | hsa:10327 | AKR1A1 | Glycolysis / Gluconeogenesis

...

Without providing such a dataframe for kegg.list argument, an old version will be used automatically.

Examples

require(KeggPA)
kpa = keggPA(hgnc=c("TP53", "BRCA1", "BRCA2", "VHL"), proj_name="example_genes")

Note

This R packages is neither supported nor endorsed by Kegg pathway database.

mehrankr/KeggPA documentation built on May 22, 2019, 6:49 p.m.