select_peptide_data: select_peptide_data

In melissakey/PQPQ: This is a port of Jenny Forshed's PQPQ package to R from Matlab.

Description

Select correlating peptides and subset them into clusters.

Usage

select_peptide_data(X, data_matrix_name, score_limit, p_val,
  peptide_confidence_limit, cut_point = 1)

Arguments

X	the input data - see details.
data_matrix_name	the name of the data matrix with the (normalized) peak intensities
score_limit	currently unused
p_val	the p-value associated with the significance of the correlation between 2 peptides
cut_point	the inconsistency cut-off for clustering peptides by correlation distance.

melissakey/PQPQ documentation built on May 4, 2019, 7:42 p.m.