juxta: Genomic vizualization for epigenomics tracks

Description Usage Arguments Author(s) Examples

View source: R/juxta.R

Description

Genomic vizualization for epigenomics tracks

Usage

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juxta(chrname = "chr22", ...)

Arguments

chrname

character string specifing the chromosome of interest

...

Any additional arguments

Author(s)

Mohammed Abdallah

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (chrname = "chr22", ...) 
{
    require(ERBS)
    data(HepG2)
    data(GM12878)
    require(ggbio)
    require(GenomicRanges)
    ap1 = autoplot(GenomicRanges::subset(HepG2, seqnames == chrname))
    ap2 = autoplot(GenomicRanges::subset(GM12878, seqnames == 
        chrname))
    tracks(HepG2 = ap1, Bcell = ap2, ...)
  }

melsiddieg/epigenoviz documentation built on May 22, 2017, 3:30 a.m.