Man pages for menggf/decd
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
| bi.deg | Transformation an expression matrix to binary differential... |
| cluster.module | Predict the DEGs modules shared by patients |
| deg.specific | Predict the patient-specific DEGs using bi-clustering... |
| module.compare | Compare and plot the overlap among predicted modules |
| module.curve | Display the patient-gene numbers during bi-clustering... |
| module.exact | Extract the patients and genes from module |
| module.modeling | Predict and report the proper gene-patient number of... |
| module.overlap | Plot the overlap among predicted DEG modules |
| module.screen | Screen the feature patients or genes in predicted modules |
| Plot.cluster.module | Plot the DEGs modules |
| Plot.deg | Plot the DEGs before or after cross-validation |
| Plot.deg.specific | Plot the DEGs before or after cross-validation |
| Plot.deg.specific.test | Plot the DEGs before or after cross-validation |
| Plot.seed.module | Plot the DEGs modules shared by patients |
| seed.module | Predict the DEGs modules shared by patients |
| summarize.cluster.module.test | Summarize the DEG modules |
| summarize.deg.specific | Summarize the patient-specific DEGs |
| summarize.deg.specific.test | Summarize the patient-specific DEGs |
| summarize.seed.module | Summarize the DEG modules |
