module.overlap: Plot the overlap among predicted DEG modules

In menggf/decd: A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis

Description

Plot the overlap among predicted DEG modules

Usage

module.overlap(res.module, show.mods = NULL, type = c("model",
  "max.patients", "max.genes")[1], max.n = 30, show.overlap = TRUE,
  cex = 10)

Arguments

res.module	a 'seed.module' or 'cluster.module' object returned by seed.module or cluster.module
show.mods	the modules to display
type	the module type to display
max.n	the maximum number of modules to plot. If "show.mods" is set, this option will be ignored.
show.overlap	boolen, display the overlap number
cex	the font cex to display the overlap number, default 10.

Details

The DEG modules may have partial overlaps for either genes or patients. This function plots the overlaps for genes and patients from DEG modules in two heatmaps. It can be used to find DEG patterns.

Value

The heatmap plot for gene and patient overlaps.

Author(s)

Guofeng Meng

References

Gu Z, Eils R and Schlesner M (2016). Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinformatics.

Examples

## Not run: 
module.overlap(res.module, max.n=15,type="model")

## End(Not run)

menggf/decd documentation built on Jan. 2, 2020, 12:53 a.m.