MetaDCN: MetaDCN

In metaOmics/MetaDCN: Meta-analysis framework for differential coexpression network (DCN) detection

Description

Assemble basic modules into supermodules

Usage

MetaDCN(GeneNetRes, SearchBMRes, FDRCutoff, w1 = NULL, silent = FALSE)

Arguments

GeneNetRes	A list from GeneNet function
SearchBMRes	A list from SearchBM function
FDRCutoff	A number to specify FDR cutoff for basic modules
w1	A number chosen from (100, 200, ..., 700) to specify the weight1 used in objective function (optional). If not specified, w1 from SearchBM function will be used (recommended).
silent	TRUE/FALSE to specify if suppress screen output

Details

This function will assemble basic modules detected from SearchBM into supermodules.

Value

MetaDNC will return a list and files for Cytoscape.

list containing:

w1	w1 used
BMInCaseSig	Summary of basic modules higher correlated in Case controling FDR
BMInControlSig	Summary of basic modules higher correlated in Control controling FDR
Supermodule	Summary of supermodules

CytoscapeFiles is a folder containing files for Cytoscape.

Author(s)

Li Zhu ([e-mail])

metaOmics/MetaDCN documentation built on May 29, 2019, 4:43 a.m.