MetaTSP.Pvalue: A Meta-Analytic Top Scoring Pair Method for Robust...
In metaOmics/MetaKTSP: A Meta-Analytic Top Scoring Pair Method for Robust Cross-Study Validation of Omics Prediction Analysis
Description
Usage
Arguments
Value
Author(s)
View source: R/MetaKTSP_Source.R
Description
Fit a prediction rule of meta top scoring pair
Usage
1
2
MetaTSP.Pvalue(DList, Method = "Fisher", K.max, is.VO = TRUE,
Para.num.gene = 10000)
Arguments
DList
Input variable matrix (a list of multiple datasets; row=features, column=samples).
Method
"Fisher" = fisher's meta-analysis, "Stouffer" = Stouffer's meta-analysis, NULL = mean score method.
K.max
The maximum number of top score pairs.
is.VO
Logical value indicating whether K selection is Variance optimization (VO).
Para.num.gene
# of top scoring pairs that are initially considered.
Value
meta.tspobj = a list of meta top scoring pairs results
meta.tspobj$model = Meta top scoring pairs (n by k-1) meta.tspobj$num.K = #
of K meta top scoring pairs
Author(s)
Chien-Wei Lin <masaki396@gmail.com>
metaOmics/MetaKTSP documentation built on May 29, 2019, 4:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
View source: R/MetaKTSP_Source.R
Description
Fit a prediction rule of meta top scoring pair
Usage
1 2 | MetaTSP.Pvalue(DList, Method = "Fisher", K.max, is.VO = TRUE,
Para.num.gene = 10000)
|
Arguments
DList |
Input variable matrix (a list of multiple datasets; row=features, column=samples). |
Method |
"Fisher" = fisher's meta-analysis, "Stouffer" = Stouffer's meta-analysis, NULL = mean score method. |
K.max |
The maximum number of top score pairs. |
is.VO |
Logical value indicating whether K selection is Variance optimization (VO). |
Para.num.gene |
# of top scoring pairs that are initially considered. |
Value
meta.tspobj = a list of meta top scoring pairs results meta.tspobj$model = Meta top scoring pairs (n by k-1) meta.tspobj$num.K = # of K meta top scoring pairs
Author(s)
Chien-Wei Lin <masaki396@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.