chen_crxcg: Vector of IDs for cross-reactive or polymorphic CpGs on the...

In metamaden/methyPre:

Description

Listed CpG probe IDs were among the 6-percent of array probes shown in Chen et al 2013 to either be polymorphic or co-hybridize with alternate sequences on the array.

Usage

data(chen_crxcg)

Format

A vector of CpG probe IDs.

References

Chen, Y, Mathieu Lemire, Sanaa Choufani et al. "Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray". Epigenetics 2013 Feb 1; 8(2): 203-209.

Examples

# require(wateRmelon); data(melon)
data(chen_crxcg)

dim(melon)

#Features  Samples
#    3363       12

dim(melon[!rownames(melon) %in% chen.crxcg,])

#Features  Samples
#    3250       12

metamaden/methyPre documentation built on May 27, 2019, 7:27 a.m.