bathresh: Get BeadArray control outcomes from a matrix of metric...
In metamaden/recountmethylationManuscriptSupplement: Supplement for the manuscript "Human methylome variation across Infinium 450K data on the Gene Expression Omnibus"
Description
Usage
Arguments
Value
See Also
View source: R/beadarray_cgctrlmetrics.R
Description
Apply BeadArray thresholds to determine passing and failing samples.
This function takes a matrix of signals and performs controls using
minimum signal thresholds from the BeadArray Controls Reporter
Software Guide ewastools.
Usage
1
Arguments
rm
BeadArray signals returned by 'bactrl()'
(matrix, rows = samples, cols = metrics).
pass.lab
Label for passing samples ("PASS", chracter).
fail.lab
Label for failing samples ("FAIL", chracter).
Value
Matrix of threshold assessments, either 'FAIL' or 'PASS',
of same dimensions as input matrix.
See Also
bactrl
metamaden/recountmethylationManuscriptSupplement documentation built on May 31, 2021, 5:27 a.m.
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Description Usage Arguments Value See Also
View source: R/beadarray_cgctrlmetrics.R
Description
Apply BeadArray thresholds to determine passing and failing samples. This function takes a matrix of signals and performs controls using minimum signal thresholds from the BeadArray Controls Reporter Software Guide ewastools.
Usage
1 |
Arguments
rm |
BeadArray signals returned by 'bactrl()' (matrix, rows = samples, cols = metrics). |
pass.lab |
Label for passing samples ("PASS", chracter). |
fail.lab |
Label for failing samples ("FAIL", chracter). |
Value
Matrix of threshold assessments, either 'FAIL' or 'PASS', of same dimensions as input matrix.
See Also
bactrl
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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