npde_panel: Create a display of NPDE diagnostic plots

In metrumresearchgroup/pmplots: Plots for Pharmacometrics

Create a display of NPDE diagnostic plots

Description

Get a single graphic of basic NPDE diagnostics (npde_panel()) or get the component plots in a list that can be arranged by the user (npde_panel_list()) . See npde_covariate() for plotting NPDE versus covariates.

Usage

npde_panel(
  df,
  xname = "value",
  unit_time = "hours",
  unit_tad = "hours",
  xby_time = NULL,
  xby_tad = NULL,
  tag_levels = NULL
)

npde_panel_list(
  df,
  xname = "value",
  unit_time = "hours",
  unit_tad = "hours",
  xby_time = NULL,
  xby_tad = NULL
)

Arguments

df	a data frame to plot.
xname	passed to npde_pred().
unit_time	passed to npde_tad() as xunit.
unit_tad	passed to npde_time() as xunit.
xby_time	passed to npde_time() as xby.
xby_tad	passed to npde_tad() as xby.
tag_levels	passed to patchwork::plot_annotation().

Value

npde_panel() returns a single graphic as a patchwork object with the following panels:

• NPDE versus TIME via npde_time()

• NPDE versus TAD via npde_tad()

• NPDE versus PRED via npde_pred()

• NPDE histogram via npde_hist()

• NPDE quantile-quantile plot via npde_q()

npde_panel_list() returns a list of the individual plots that are incorporated into the npde_panel() output. Each element of the list is named for the plot in that position: time, tad, pred, hist q. See Examples for how you can work with that list.

See Also

cwres_panel()

Examples

data <- pmplots_data_obs()
npde_panel(data, tag_levels = "A")

l <- npde_panel_list(data)
names(l)
with(l, (q+hist) / pred, tag_levels = "a")

metrumresearchgroup/pmplots documentation built on Oct. 15, 2024, noon