README.md

In metrumresearchgroup/qibble: Tidy Output for Open Grid Scheduler/Engine

qibble

Working in a tidy framework to manage jobs on the Open Grid Scheduler.

The Open Grid Scheduler/Engine (OGSE) is an open source batch-queuing system, developed and based upon Sun Grid Engine.

This package depends that the OGSE is installed on your system. To check this run from the terminal

qconf -sconf

This should return current configuration of the sungrid engine if there is one.

qapply

It is suggested that the R package qapply is installed. The outputs will be more informative with this package and the shiny app will be enabled.

Installation

remotes::install_bitbucket('metrumrg/qapply/working/qapply@xml2')
remotes::install_github('metrumresearchgroup/qibble')

Basic Usage

A qibble (qstat tibble) object is a tibble with the class qibble

Without qapply

qibble()

With qapply

workDir <- 'Directory where the worker processes will be spawned'
tag <- 'A label for the job and temporary files related to the job'

#same as defined in qapply call

d <- qibble(workDir = workDir,tag = tag)

glimpse(d)

plot(d)

current_jobs(d)

metrumresearchgroup/qibble documentation built on Oct. 27, 2019, 11:44 a.m.