tests/README.md

In metrumresearchgroup/shredder: Rstan Manipulation API

Tests and Coverage

31 August, 2020 11:06:24

• Coverage
• Unit Tests

This output is created by covrpage.

Coverage

Coverage summary is created using the covr package.

| Object | Coverage (%) | | :--------------------------------------- | :----------: | | shredder | 74.51 | | R/rats_example.R | 0.00 | | R/complete.R | 12.50 | | R/zzz.R | 50.00 | | R/stan_thin.R | 57.14 | | R/utils.R | 66.67 | | R/stan_names.R | 80.00 | | R/stan_retain.R | 91.30 | | R/stan_select.R | 92.31 | | R/stan_slice.R | 93.94 | | R/stan_filter.R | 96.23 | | R/partials.R | 100.00 | | R/stan_axe.R | 100.00 | | R/stan_utils.R | 100.00 |

Unit Tests

Unit Test summary is created using the testthat package.

| file | n | time | error | failed | skipped | warning | | :------------------------------------------ | -: | ----: | ----: | -----: | ------: | ------: | | test-axe.R | 2 | 0.016 | 0 | 0 | 0 | 0 | | test-filter.R | 7 | 0.209 | 0 | 0 | 0 | 0 | | test-names.R | 2 | 0.003 | 0 | 0 | 0 | 0 | | test-retain.R | 6 | 0.376 | 0 | 0 | 0 | 0 | | test-sampling.R | 7 | 0.257 | 0 | 0 | 0 | 0 | | test-select.R | 15 | 0.368 | 0 | 0 | 0 | 0 | | test-slice.R | 5 | 0.328 | 0 | 0 | 0 | 0 |

Show Detailed Test Results

| file | context | test | status | n | time | | :---------------------------------------------- | :------- | :--------------------------------- | :----- | -: | ----: | | test-axe.R | axe | axe elements: no fit_instance | PASS | 1 | 0.015 | | test-axe.R | axe | axe elements: no stanmodel | PASS | 1 | 0.001 | | test-filter.R | filter | filters: default | PASS | 1 | 0.021 | | test-filter.R | filter | filters: not permuted | PASS | 1 | 0.020 | | test-filter.R | filter | filters: not permuted | PASS | 1 | 0.011 | | test-filter.R | filter | filters: indexed name | PASS | 1 | 0.011 | | test-filter.R | filter | filters: compound query | PASS | 1 | 0.009 | | test-filter.R | filter | filters: no samples | PASS | 1 | 0.007 | | test-filter.R | filter | filters: invalid pars | PASS | 1 | 0.130 | | test-names.R | names | names: default | PASS | 1 | 0.002 | | test-names.R | names | names: expand | PASS | 1 | 0.001 | | test-retain.R | retain | retain: default | PASS | 1 | 0.003 | | test-retain.R | retain | retain: null | PASS | 1 | 0.353 | | test-retain.R | retain | retain: single | PASS | 1 | 0.002 | | test-retain.R | retain | retain: multiple | PASS | 1 | 0.001 | | test-retain.R | retain | retain: all | PASS | 1 | 0.001 | | test-retain.R | retain | retain: bad | PASS | 1 | 0.016 | | test-sampling.R | sampling | slice: default | PASS | 1 | 0.232 | | test-sampling.R | sampling | slice: no warmup | PASS | 1 | 0.003 | | test-sampling.R | sampling | slice: bad indexs | PASS | 2 | 0.008 | | test-sampling.R | sampling | thinning: thin_n | PASS | 1 | 0.005 | | test-sampling.R | sampling | thinning: thin_frac | PASS | 1 | 0.005 | | test-sampling.R | sampling | thinning: no warmup | PASS | 1 | 0.004 | | test-select.R | select | names: no pars | PASS | 1 | 0.003 | | test-select.R | select | names: single par | PASS | 1 | 0.002 | | test-select.R | select | names: multiple pars | PASS | 1 | 0.002 | | test-select.R | select | names: par index | PASS | 1 | 0.002 | | test-select.R | select | names: character par | PASS | 1 | 0.002 | | test-select.R | select | names: character par syms | PASS | 1 | 0.003 | | test-select.R | select | names: regex character pars | PASS | 1 | 0.003 | | test-select.R | select | names: remove summary | PASS | 1 | 0.336 | | test-select.R | select | partials: no pars | PASS | 1 | 0.002 | | test-select.R | select | partials: starts_with | PASS | 1 | 0.002 | | test-select.R | select | partials: ends_with | PASS | 1 | 0.002 | | test-select.R | select | partials: starts_contains | PASS | 1 | 0.003 | | test-select.R | select | partials: mixed | PASS | 1 | 0.002 | | test-select.R | select | partials: par regex index | PASS | 1 | 0.002 | | test-select.R | select | partials: par regex multiple index | PASS | 1 | 0.002 | | test-slice.R | slice | slice: empty | PASS | 1 | 0.312 | | test-slice.R | slice | slice: single | PASS | 1 | 0.004 | | test-slice.R | slice | slice: single no warmup | PASS | 1 | 0.003 | | test-slice.R | slice | slice: vector | PASS | 1 | 0.004 | | test-slice.R | slice | slice: reset permut | PASS | 1 | 0.005 |

Session Info

| Field | Value | | | :------- | :-------------------------------- | :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | Version | R version 4.0.2 (2020-06-22) | | | Platform | x86_64-apple-darwin17.0 (64-bit) | | | Running | macOS Catalina 10.15.6 | | | Language | en_US | | | Timezone | UTC | |

| Package | Version | | :------- | :------ | | testthat | 2.3.2 | | covr | 3.3.2 | | covrpage | 0.0.71 |

metrumresearchgroup/shredder documentation built on Sept. 1, 2020, 5:36 p.m.