Visualisations for Generalized Additive Models

check0D | Checking GAM simulated residuals or responses |

check1D | Checking GAM residuals or responses along one covariate |

check2D | Checking GAM residuals along two covariates |

check.gamViz | Some diagnostics for a fitted gam model |

fix.family.cdf | Getting the CDF of a gam family |

gammV | Fit a GAMM or GAMM4 model and get a gamViz object |

gamV | Fit a GAM model and get a gamViz object |

getGam | Convert gamViz object to gamObject |

getViz | Converting gam objects to gamViz objects |

gridPrint | Plotting plotSmooth objects on a grid |

l_bound | Add boundaries to smooth effect plot |

l_ciBar | Adding confidence intervals to barplots |

l_ciLine | Adding confidence intervals to effect plot |

l_ciPoly | Adding confidence band to effect plots |

l_clusterLine | Cluster and plot smooth effects |

l_coordContour | Adding coordinate lines |

l_dens1D | Adding density estimate to a plot |

l_dens2D | Adding density estimate heatmap |

l_densCheck | Checking residuals conditional density |

l_fitBar | Adding barplot to effect plots |

l_fitContour | Adding fitted effect contour lines |

l_fitDens | Adding density strip of fitted effect |

l_fitLine | Add fitted smooth effect curve |

l_fitPoints | Adding points representing the fitted effect |

l_fitRaster | Adding raster representing the fitted effect |

l_glyphs2D | Adding glyphs to 2D plots |

l_gridCheck1D | Binning and checking GAM residuals |

l_gridCheck2D | Binning and checking GAM residuals |

l_gridQCheck1D | Checking sign of residuals along one covariate |

l_gridQCheck2D | Binning and checking QGAM residuals |

l_hist | Adding histogram to a plot |

listLayers | Lists available layers for plotSmooth objects |

l_points | Add points to plot |

l_poly | Add polygons to effect plots |

l_pvContour | Adding contour of p-values |

l_pvRaster | Adding raster or heat-map of p-values |

l_rug | Adding rug to margins of a plot |

l_simLine | Add simulated smooth effect curves |

l_vline | Adding vertical line to a plot |

mqgamV | Fit multiple QGAM models and get a mgamViz object |

plotDiff | Generic plotting of differences |

plotDiff.mgcv.smooth.1D | Plotting differences between two 1D smooth effects |

plotDiff.mgcv.smooth.2D | Plotting differences between two 2D smooth effects |

plotDiff.sos.smooth | Plotting differences between two smooths on the sphere |

plot.fs.interaction.1D | Plotting one dimensional smooth factor interactions |

plot.gamViz | Basic GAM plotting |

plot.mgamViz | Plotting multiple quantile GAMs |

plot.mgcv.smooth.1D | Plotting one dimensional smooth effects |

plot.mgcv.smooth.2D | Plotting two dimensional smooth effects |

plot.mgcv.smooth.MD | Plotting slice of higher-dimensional smooth effects |

plot.mrf.smooth | Plotting Markov random field smooths |

plot.ptermFactor | Plotting factor or logical parametric effects |

plot.ptermInteraction | Plotting parametric interactions |

plot.ptermNumeric | Plotting numeric parametric effects |

plot.random.effect | Plotting random effects |

plotRGL | Generic RGL plotting function |

plotRGL.mgcv.smooth.2D | Visualizing 2D smooth effects in 3D |

plotRGL.mgcv.smooth.MD | Visualizing a 2D slice of a smooth effects in 3D |

plotSlice | Plotting sequence of slices of 2D smooth effect |

plot.sos.smooth | Plotting smooths on the sphere |

postSim | Posterior simulation from a GAM object |

print.checkGam | Printing the output of check.gamViz |

print.plotGam | Printing the output of plot.gamViz |

print.plotSmooth | Printing plots of smooth effects |

print.qqGam | Printing the output of qq.gamViz |

pterm | Extracting parametric effects from a GAM model |

qgamV | Fit a QGAM model and get a gamViz object |

Generic QQ plots | |

qq.gamViz | QQ plots for gam model residuals |

qqplots | Quantile-Quantile Plots |

residuals.gamViz | Generalized Additive Model residuals |

shine | Generic shine function |

shine.qqGam | Shiny QQ-plots for GAMs |

simulate.gam | Simulating responses from a GAM object |

sm | Extracting a smooth effect from a GAM model |

zoom | Generic zooming function |

zoom.qqGam | Efficiently zooming on GAM QQ-plots |

zto1 | Constructing a decreasing function from (0,1) to (0,1) |

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