README.md

In mghamilton/SNPpools: Maximum likelihood parentage assignment using quantitative genotypes

SNPpools

SNPpools is a R package (R Core Team 2016) comprised of four primary functions: parent.assign.fun, sim.parent.assign.fun, snp.param.indiv.fun and snp.param.pools.fun.

What is SNPpools

• SNPpools implements the methods of Hamilton MG (2020) Maximum likelihood parentage assignment using quantitative genotypes.
• The functions each have a R help documentation. Example data sets and examples of parentage assignment are detailed in this documentation.

To install SNPpools in R

• install.packages("devtools")
• library(devtools)
• install_github("mghamilton/SNPpools")
• library(SNPpools)
• help ("parent.assign.fun")
• help ("sim.parent.assign.fun")
• help ("snp.param.indiv.fun")
• help ("snp.param.pools.fun")

Contact details

• [e-mail]

References

• Hamilton (2020) Maximum likelihood parentage assignment using quantitative genotypes.
• R Core Team (2016) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria

mghamilton/SNPpools documentation built on Feb. 13, 2021, 12:52 a.m.