|boxshade||Boxshade: Shading Multiple Aligned Sequences|
|c2s||Convenience Functions to Convert Strings to Character Vectors|
|clustal||Run Multiple Sequence Alignment (ClustalW) on a Set of...|
|dist||Calculate Distances between Sets of Sequences|
|kalign||Multiple Sequence Alignment (Kalign)|
|mafft||Run Multiple Sequence Alignment (MAFFT) on a Set of Sequences|
|MUSCLE||Run Multiple Sequence Alignment (MUSCLE) on a Set of...|
|mutations||Creates Random Mutations of a Sequence|
|plot||Plot Genetic Sequences and Alignments|
|random_sequences||Create a Set of Random Sequences|
|rMSA_INSTALL||Installing Third-Party Software for rMSA|
|simRank||Compute the SimRank Similarity between Sets of Sequences|
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