cohortCharacterization: This function will perform baseline characterization for the...

In mi-erasmusmc/AsthmaCOPDTreatmentPatterns: A package to analyse real-world treatment patterns for patients with asthma, COPD and Asthma-COPD Overlap.

This function will perform baseline characterization for the the target cohorts.

Description

This function will perform baseline characterization for the the target cohorts.

Usage

cohortCharacterization(
  connection,
  connectionDetails,
  cdmDatabaseSchema,
  cohortDatabaseSchema,
  cohortTable,
  outputFolder,
  databaseId,
  targetCohortIds,
  minCellCount
)

Arguments

connection	Connection to database server.
connectionDetails	An object of type connectionDetails as created using the createConnectionDetails function in the DatabaseConnector package.
cdmDatabaseSchema	Schema name where your patient-level data resides. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
cohortDatabaseSchema	Schema name where intermediate data can be stored. You will need to have write priviliges in this schema. Note that for SQL Server, this should include both the database and schema name, for example 'cdm_data.dbo'.
cohortTable	The name of the table that will be created in the work database schema. This table will hold the target and event cohorts used in this study.
outputFolder	Name of local folder to place results; make sure to use forward slashes (/).
databaseId	Unique identifier for database (can be the same as databaseName).
targetCohortIds	IDs to refer to target cohorts.
minCellCount	Minimum number of persons with a specific treatment pathway for the pathway to be included in analysis.

mi-erasmusmc/AsthmaCOPDTreatmentPatterns documentation built on Feb. 25, 2024, 2:34 p.m.