STUDY-PACKAGE-SHARE.md

In mi-erasmusmc/CovCoagEmaPrediction: Coagulopathy prediction in SARS-Cov-2

Instructions To Share Package

If you want to make the package available for others to run, we suggest:

• Replace the current readme.md with the readmeSharing.md. The readmeSharing.md contains instructions for installing the package from the 'ohdsi-studies' github repo.
• update the new readme.md with the study information
• Potentially update the renv lockfile: ```{r setup, include=FALSE}

Create the Renv lock file with all the R libraries and versions

make sure you are in the study location (check with getwd())

OhdsiRTools::createRenvLockFile("CovCoagEmaPrediction")

If your study included python models (such as: adaBoost, neural network, decision tree, random forest, naive bayes or the deep learning)

then you also want to keep a copy of the r-reticulate python environment (or the python environment used by changing 'r-reticulate'):

args <- c("env", "export","-n","r-reticulate", "> pyEnvironment.yml") system2(reticulate::conda_binary(), args, stdout = TRUE)

```

• Share the package by adding it to the 'ohdsi-studies' github repo. You may need to ask for the 'ohdsi-studies' github to be created.

mi-erasmusmc/CovCoagEmaPrediction documentation built on Dec. 21, 2021, 5:54 p.m.