Files in mi-erasmusmc/EmcNoriDementiaModel
A Package Skeleton for Replicating Published Prediction Models
.Rbuildignore
.gitignore
.gitmodules
DESCRIPTION
EmcNoriDementiaModel.Rproj
HydraConfig.json
NAMESPACE
NEWS.md
R/CohortCovariateCode.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/EmcNoriDementiaModel.R
R/Main.R
R/MeasurementCohortCovariateCode.R
R/MeasurementCovariateCode.R
R/PackageResults.R
R/ageCovariateCode.R
R/helpers.R
R/loadJsonModel.R
README.md
_pkgdown.yml
docs/404.html
docs/articles/PopulatingSkeletonPackage.html
docs/articles/UsingAgeCovariates.html
docs/articles/UsingCohortCovariates.html
docs/articles/UsingMeasurementCohortCovariates.html
docs/articles/UsingMeasurementCovariates.html
docs/articles/UsingSkeletonPackage.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/EmcNoriDementiaModel.html
docs/reference/createCohorts.html
docs/reference/execute.html
docs/reference/getAgeCovariateData.html
docs/reference/getCohortCovariateData.html
docs/reference/getMeasurementCohortCovariateData.html
docs/reference/getMeasurementCovariateData.html
docs/reference/index.html
docs/reference/packageResults.html
existingModelSettings.json
extras/CodeToRun.R
extras/PackageMaintenance.R
extras/PopulatePackage.R
extras/exampleJsonCreation.R
extras/packageDeps.R
inst/cohorts/ABNORMALITY_OF_GAIT.json
inst/cohorts/ACUTE_BUT_ILLDEFINED_CEREBROVASCULAR_DISEASE.json
inst/cohorts/ALTERED_MENTAL_STATUS.json
inst/cohorts/BIPOLAR_DISORDER_UNSPECIFIED.json
inst/cohorts/BLOOD_SUGAR_DIAGNOSTIC.json
inst/cohorts/CEPHALEXIN_MONOHYDRATE.json
inst/cohorts/CITALOPRAM_HYDROBROMIDE.json
inst/cohorts/CLOPIDOGREL_BISULFATE.json
inst/cohorts/COMPUTED_TOMOGRAPHY_HEAD_OR_BRAIN.json
inst/cohorts/DEPRESSIVE_DISORDER_NOT_ELSEWHERE_CLASSIFIED.json
inst/cohorts/DIABETES_MELLITUS.json
inst/cohorts/DIABETES_MELLITUS_2.json
inst/cohorts/DIZZINESS_AND_GIDDINESS.json
inst/cohorts/DULOXETINE_HCL.json
inst/cohorts/EDEMA.json
inst/cohorts/ENCOUNTER_FOR_LONGTERM_CURRENT_USE_OF_OTHER_MEDICATIONS.json
inst/cohorts/FUROSEMIDE.json
inst/cohorts/GABAPENTIN.json
inst/cohorts/HYDROCODONE_BIT_ACETAMINOPHEN.json
inst/cohorts/LACK_OF_COORDINATION.json
inst/cohorts/LISINOPRIL.json
inst/cohorts/LOSS_OF_WEIGHT.json
inst/cohorts/MEMORY_LOSS.json
inst/cohorts/METFORMIN_HCL.json
inst/cohorts/MILD_COGNITIVE_IMPAIRMENT_SO_STATED.json
inst/cohorts/MUSCLE_WEAKNESS_GENERALIZED.json
inst/cohorts/Nori_Outcome.json
inst/cohorts/Nori_Target_0_Prior_0_Post_v1.json
inst/cohorts/OTHER_ALTERATION_OF_CONSCIOUSNESS.json
inst/cohorts/OTHER_CHRONIC_PAIN.json
inst/cohorts/OTHER_CONVULSIONS.json
inst/cohorts/OTHER_MALAISE_AND_FATIGUE.json
inst/cohorts/OXYBUTYNIN_CHLORIDE.json
inst/cohorts/PARALYSIS_AGITANS.json
inst/cohorts/PERSONAL_HISTORY_OF_FALL.json
inst/cohorts/POTASSIUM_CHLORIDE.json
inst/cohorts/PROPOXYPHENE_ACETAMINOPHEN.json
inst/cohorts/RADIOLOGIC_EXAMINATION_CHEST_SINGLE_VIEW_FRONTAL.json
inst/cohorts/SCREENING_MAMMOGRAPHY_COMPUTERAIDED_DETECTION.json
inst/cohorts/SERTRALINE_HCL.json
inst/cohorts/SIMVASTATIN.json
inst/cohorts/SULFAMETHOXAZOLE_TRIMETHOPRIM.json
inst/cohorts/TOLTERODINE_TARTRATE.json
inst/cohorts/TRAMADOL_HCL.json
inst/cohorts/UNSPECIFIED_CEREBRAL_ARTERY_OCCLUSION_WITH_CEREBRAL_INFARCTION.json
inst/cohorts/UNSPECIFIED_CONSTIPATION.json
inst/cohorts/UNSPECIFIED_FALL.json
inst/cohorts/UNSPECIFIED_PSYCHOSIS.json
inst/cohorts/UNSPECIFIED_URINARY_INCONTINENCE.json
inst/cohorts/URGE_INCONTINENCE.json
inst/cohorts/URINARY_TRACT_INFECTION_SITE_NOT_SPECIFIED.json
inst/cohorts/VENLAFAXINE_HCL.json
inst/doc/PopulatingSkeletonPackage.pdf
inst/doc/PopulatingSkeletonPackage.tex
inst/doc/UsingAgeCovariates.pdf
inst/doc/UsingAgeCovariates.tex
inst/doc/UsingCohortCovariates.pdf
inst/doc/UsingCohortCovariates.tex
inst/doc/UsingMeasurementCohortCovariates.pdf
inst/doc/UsingMeasurementCohortCovariates.tex
inst/doc/UsingMeasurementCovariates.pdf
inst/doc/UsingMeasurementCovariates.tex
inst/doc/UsingSkeletonPackage.pdf
inst/doc/UsingSkeletonPackage.tex
inst/settings/CohortsToCreate.csv
inst/settings/existingModelList.json
inst/settings/settings.csv
inst/sql/sql_server/ABNORMALITY_OF_GAIT.sql
inst/sql/sql_server/ACUTE_BUT_ILLDEFINED_CEREBROVASCULAR_DISEASE.sql
inst/sql/sql_server/ALTERED_MENTAL_STATUS.sql
inst/sql/sql_server/BIPOLAR_DISORDER_UNSPECIFIED.sql
inst/sql/sql_server/BLOOD_SUGAR_DIAGNOSTIC.sql
inst/sql/sql_server/CEPHALEXIN_MONOHYDRATE.sql
inst/sql/sql_server/CITALOPRAM_HYDROBROMIDE.sql
inst/sql/sql_server/CLOPIDOGREL_BISULFATE.sql
inst/sql/sql_server/COMPUTED_TOMOGRAPHY_HEAD_OR_BRAIN.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/DEPRESSIVE_DISORDER_NOT_ELSEWHERE_CLASSIFIED.sql
inst/sql/sql_server/DIABETES_MELLITUS.sql
inst/sql/sql_server/DIABETES_MELLITUS_2.sql
inst/sql/sql_server/DIZZINESS_AND_GIDDINESS.sql
inst/sql/sql_server/DULOXETINE_HCL.sql
inst/sql/sql_server/EDEMA.sql
inst/sql/sql_server/ENCOUNTER_FOR_LONGTERM_CURRENT_USE_OF_OTHER_MEDICATIONS.sql
inst/sql/sql_server/FUROSEMIDE.sql
inst/sql/sql_server/GABAPENTIN.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/HYDROCODONE_BIT_ACETAMINOPHEN.sql
inst/sql/sql_server/LACK_OF_COORDINATION.sql
inst/sql/sql_server/LISINOPRIL.sql
inst/sql/sql_server/LOSS_OF_WEIGHT.sql
inst/sql/sql_server/MEMORY_LOSS.sql
inst/sql/sql_server/METFORMIN_HCL.sql
inst/sql/sql_server/MILD_COGNITIVE_IMPAIRMENT_SO_STATED.sql
inst/sql/sql_server/MUSCLE_WEAKNESS_GENERALIZED.sql
inst/sql/sql_server/Nori_Outcome.sql
inst/sql/sql_server/Nori_Target_0_Prior_0_Post_v1.sql
inst/sql/sql_server/OTHER_ALTERATION_OF_CONSCIOUSNESS.sql
inst/sql/sql_server/OTHER_CHRONIC_PAIN.sql
inst/sql/sql_server/OTHER_CONVULSIONS.sql
inst/sql/sql_server/OTHER_MALAISE_AND_FATIGUE.sql
inst/sql/sql_server/OXYBUTYNIN_CHLORIDE.sql
inst/sql/sql_server/PARALYSIS_AGITANS.sql
inst/sql/sql_server/PERSONAL_HISTORY_OF_FALL.sql
inst/sql/sql_server/POTASSIUM_CHLORIDE.sql
inst/sql/sql_server/PROPOXYPHENE_ACETAMINOPHEN.sql
inst/sql/sql_server/RADIOLOGIC_EXAMINATION_CHEST_SINGLE_VIEW_FRONTAL.sql
inst/sql/sql_server/SCREENING_MAMMOGRAPHY_COMPUTERAIDED_DETECTION.sql
inst/sql/sql_server/SERTRALINE_HCL.sql
inst/sql/sql_server/SIMVASTATIN.sql
inst/sql/sql_server/SULFAMETHOXAZOLE_TRIMETHOPRIM.sql
inst/sql/sql_server/TOLTERODINE_TARTRATE.sql
inst/sql/sql_server/TRAMADOL_HCL.sql
inst/sql/sql_server/UNSPECIFIED_CEREBRAL_ARTERY_OCCLUSION_WITH_CEREBRAL_INFARCTION.sql
inst/sql/sql_server/UNSPECIFIED_CONSTIPATION.sql
inst/sql/sql_server/UNSPECIFIED_FALL.sql
inst/sql/sql_server/UNSPECIFIED_PSYCHOSIS.sql
inst/sql/sql_server/UNSPECIFIED_URINARY_INCONTINENCE.sql
inst/sql/sql_server/URGE_INCONTINENCE.sql
inst/sql/sql_server/URINARY_TRACT_INFECTION_SITE_NOT_SPECIFIED.sql
inst/sql/sql_server/VENLAFAXINE_HCL.sql
man/EmcNoriDementiaModel.Rd
man/createCohorts.Rd
man/execute.Rd
man/getAgeCovariateData.Rd
man/getCohortCovariateData.Rd
man/getMeasurementCohortCovariateData.Rd
man/getMeasurementCovariateData.Rd
man/packageResults.Rd
vignettes/PopulatingSkeletonPackage.rmd
vignettes/UsingAgeCovariates.rmd
vignettes/UsingCohortCovariates.rmd
vignettes/UsingMeasurementCohortCovariates.rmd
vignettes/UsingMeasurementCovariates.rmd
vignettes/UsingSkeletonPackage.rmd
