TestData: TestData: A test dataset for DEsingle

Description Usage Format Details Source See Also Examples

Description

A toy dataset containing a single-cell RNA-seq (scRNA-seq) read counts matrix and its grouping information.

Usage

1

Format

Details

Source

Petropoulos S, et al. Cell, 2016, 165(4): 1012-1026.

See Also

DEsingle, for the detection of differentially expressed genes from scRNA-seq data.

DEtype, for the classification of differentially expressed genes found by DEsingle.

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
# Load test data for DEsingle
data(TestData)

# Specifying the two groups to be compared
# The sample number in group 1 and group 2 is 50 and 100 respectively
group <- factor(c(rep(1,50), rep(2,100)))

# Detecting the differentially expressed genes
results <- DEsingle(counts = counts, group = group)

# Dividing the differentially expressed genes into 3 categories
results.classified <- DEtype(results = results, threshold = 0.05)

miaozhun/DEsingle documentation built on June 21, 2018, 3:51 a.m.