CommT.anova: Conduct ANOVA analysis on tree distance matrix
In michaelgruenstaeudl/CommT_Code: Comparative Phylogeographic Analysis using the Community Tree Framework
Description
Usage
Arguments
Author(s)
Examples
Description
Function to conduct an ANOVA analysis on the matrix of tree distances generated via function CommT.kfdist().
Usage
1
CommT.anova(in_df)
Arguments
in_df
a dataframe storing the tree distances inferred via function CommT.kfdist(). This dataframe constitutes a stacked list of distances grouped by genetic locus and is the default output of function CommT.kfdist()
Author(s)
Michael Gruenstaeudl
Maintainer: Michael Gruenstaeudl [email protected]
Examples
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# Load libraries
# require(ape)
# Load input data
data(post_gt_distrs_BEAST)
data(post_gt_distrs_starBEAST)
# Calculate KF distances
in_data = CommT.kfdist(post_gt_distrs_BEAST, post_gt_distrs_starBEAST)
# Generate ANOVA legend
legend_text = CommT.anova(in_data)
michaelgruenstaeudl/CommT_Code documentation built on May 22, 2017, 6:35 a.m.
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Description Usage Arguments Author(s) Examples
Description
Function to conduct an ANOVA analysis on the matrix of tree distances generated via function CommT.kfdist().
Usage
1 | CommT.anova(in_df)
|
Arguments
in_df |
a dataframe storing the tree distances inferred via function CommT.kfdist(). This dataframe constitutes a stacked list of distances grouped by genetic locus and is the default output of function CommT.kfdist() |
Author(s)
Michael Gruenstaeudl
Maintainer: Michael Gruenstaeudl [email protected]
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | # Load libraries
# require(ape)
# Load input data
data(post_gt_distrs_BEAST)
data(post_gt_distrs_starBEAST)
# Calculate KF distances
in_data = CommT.kfdist(post_gt_distrs_BEAST, post_gt_distrs_starBEAST)
# Generate ANOVA legend
legend_text = CommT.anova(in_data)
|
michaelgruenstaeudl/CommT_Code documentation built on May 22, 2017, 6:35 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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