Global functions | |
---|---|
.onAttach | Source code |
.onLoad | Source code |
Collapse.report | Source code |
CovCalc | Source code |
FilterByKeywords | Source code |
GenerateIRSynteny | Source code |
HistCol | Source code |
PACVr | Man page |
PACVr-package | Man page |
PACVr.Chromosome.Ideogram.Plot | Source code Source code |
PACVr.Gene.Connector.Plot | Source code |
PACVr.Gene.Name.Plot | Source code |
PACVr.Get.Start.End.Locations | Source code |
PACVr.Histogram.Plot | Source code |
PACVr.Ideogram.Tick.Plot | Source code |
PACVr.compileCovStats | Source code |
PACVr.complete | Man page Source code |
PACVr.parseSource | Source code |
PACVr.read.gb | Source code |
PACVr.vizWithRCircos | Source code |
ParseQuadripartiteStructure | Source code |
RCircos.Env | Man page |
RCircosInit | Source code |
Reorganize.report | Source code |
addLegend | Source code |
addLowCovWin_perKilobase | Source code |
annotateMissingRegions | Source code |
boolToDeci | Source code |
calcCovDepth | Source code |
calcCovEvenness | Source code |
checkIREquality | Source code |
evennessScore | Source code |
fillDataFrame | Source code |
fillMissingRegions | Source code |
filterByType | Source code |
filterCovData | Source code |
filterCovDataField | Source code |
filterLogical | Source code |
filterPosNumeric | Source code |
filter_IR_genes | Source code |
filter_IR_noncoding | Source code |
filter_IR_regions | Source code |
findIRAlignment | Source code |
findIRDifference | Source code |
fixGbkChar | Source code |
fixReferences | Source code |
getAmbigCounts | Source code |
getCovData | Source code |
getCovDepth | Source code |
getCovDepths | Source code |
getCovEvenness | Source code |
getCovSummaries | Source code |
getFeatureTags | Source code |
getGbkRaw | Source code |
getGenomeSummary | Source code |
getIRBandRequirements | Source code |
getIRCheckTypes | Source code |
getLegendField | Source code |
getLegendParams | Source code |
getOutputTypes | Source code |
getSpaceLength | Source code |
getSumField2File | Source code |
getSyntenyLineTypes | Source code |
groupByRegionsName | Source code |
is.pos.numeric | Source code |
parseFeature | Source code |
parseFeatures | Source code |
plotAverageLines | Source code |
plotIRLinks | Source code |
plotMain | Source code |
plotRegionNames | Source code |
read.gbOnFix | Source code |
read.gbSeqFeatures | Source code |
read.gbSeqFeaturesAdapt | Source code |
read.gbWithHandling | Source code |
setLowCoverage | Source code |
setLowCoverages | Source code |
setPlotParams | Source code |
stainRegions | Source code |
updateCovSummary | Source code |
updateSummaries | Source code |
validateColors | Source code |
vizWithRCircos | Source code |
writeCovTables | Source code |
writeStatsTable | Source code |
writeSumTables | Source code |
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