Files in michaelgruenstaeudl/PACVr
Plastome Assembly Coverage Visualization
.Rbuildignore
.github/scripts/update_version_tag.py
.github/workflows/R-CMD-check.yaml
.github/workflows/create-release.yaml
.github/workflows/prepare-release.yaml
CHANGELOG.md
DESCRIPTION
LICENSE
NAMESPACE
NC_045072_CoverageViz.png
R/AnalysisSpecs.R
R/GBKData.R
R/IROps.R
R/OutputSpecs.R
R/PACVr-package.R
R/PACVr.R
R/RCircosOps.R
R/compileStats.R
R/coverageCalcOps.R
R/customRead.gb.R
R/helpers.R
R/parsingOps.R
R/quadripOps.R
R/readingOps.R
R/visualisationOps.R
R/writingOps.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/MG936619/MG936619.gb
inst/extdata/MG936619/MG936619_subsampled.bam
inst/extdata/NC_045072/NC_045072.gb
inst/extdata/NC_045072/NC_045072_subsampled.bam
inst/extdata/PACVr_Rscript.R
inst/extdata/PACVr_run_parallel.R
inst/extdata/README_USAGE/Mitochondrial_Genome.R
inst/extdata/README_USAGE/Plastid_Genome.R
man/PACVr-package.Rd
man/PACVr.complete.Rd
man/RCircos.Env.Rd
tests/testthat.R
tests/testthat/data/gbkDataDF/MG936619-FALSE.rds
tests/testthat/data/gbkDataDF/MG936619-TRUE.rds
tests/testthat/data/gbkDataDF/NC_045072-FALSE.rds
tests/testthat/data/gbkDataDF/NC_045072-TRUE.rds
tests/testthat/data/locations.rds
tests/testthat/test-PACVr.R
tests/testthat/test-readingOps.R
vignettes/NC_045072__all_reads.pdf
vignettes/NC_045072__map_to_multiple_locations.pdf
vignettes/NC_045072__map_to_one_location_only.pdf
vignettes/PACVr_Vignette.Rnw
