IRCheck
as PACVr.complete()
progressesgbkFile
contain the qualifiers needed for specified analysis, continues with IRCheck = NA
IRCheck = NA
IRCheck = 0
IRCheck = 0
tabularCovStats = TRUE
, if IR mismatches are identified, continues with IRCheck = NA
tabularCovStats = TRUE
, summary data corresponding to the complete genome is included in <sampleName>_summary.regions
<sampleName>_coverage.summary.regions
has been renamed <sampleName>_summary.regions
N_count
IRCheck
and possible, as detailed above, the number of mismatches between the IRs is counted as IR_mismatches
tabularCovStats
has been renamed E_score
verbose
output filessyntenyLineType
and regionsCheck
for PACVr.complete()
have been combined into IRCheck
output
note
can be used for standard coverage analysisVERSION
or ACCESSION
of GenBank file for verbose
analysisread.gb
bug logger
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