Man pages for michaelhallquist/MplusAutomation
An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus
| addNode | Add a node to a GRAPHVIZ model |
| cd | Change directory |
| checkSubmission | check on the status of submitted Mplus jobs on the cluster |
| classifyTags | Classifies Tags |
| clipString | Clip String |
| coef.mplus.model | Return coefficients for an mplus.model object |
| compareModels | Compare the output of two Mplus models |
| confint.mplus.model | Return confidence intervals for an mplus.model object |
| connectNodes | Connect two nodes |
| convert_to_filelist | helper function to crawl over the target location, determine... |
| createMixtures | Create syntax for a batch of mixture models |
| createModels | Create Mplus Input Files from Template |
| createSyntax | Create the Mplus input text for an mplusObject |
| createVarSyntax | Create Mplus syntax for variable names |
| detectColumnNames | Detect Column Names |
| detectMplus | Detect the location/name of the Mplus command |
| detectVariables | Automatically detect variables from an Mplus model object |
| dhms_to_hours | helper function to convert a dhms string to the number of... |
| divideIntoFields | Divide text into fields |
| dot-convertData | Convert a matrix or data frame to numeric or integer for... |
| dot-mplusMultinomial | Internal Function for Multinomial Regression in Mplus |
| evaluateConditional | Evaluate Conditional |
| extract | Extract function to make Mplus output work with the 'texreg'... |
| extractAux | Extract Auxiliary condition means and comparisons. |
| extractClassCounts | Extract Latent Class Counts |
| extractDataSummary | Function to extract the SUMMARY OF DATA section from Mplus... |
| extractEFAparameters | Extract the model parameters from an EFA Mplus model output |
| extractFacScoreStats | Extract Factor Score Statistics |
| extractFreeFile | Extract free file output |
| extractIndirect | Extract Indirect Effects output |
| extractIndirect_section | Extract Indirect Effects output |
| extractInput_1file | Extract and parse Mplus input file |
| extractModelParameters | (DEPRECATED) Extract model parameters from MODEL RESULTS... |
| extractModelSummaries | (DEPRECATED) Extract summary statistics from a single output... |
| extractModIndices | (DEPRECATED) Extract model modification indices. |
| extractModIndices_1chunk | Extract Modification Indices for One Chunk (Section) |
| extractModIndices_1file | Extract Modification Indices for One File |
| extractParameters_1chunk | Extract Parameters for One Chunk |
| extractParameters_1file | Extract Parameters for One File |
| extractParameters_1section | Extract Parameters for One Section |
| extractR3step | Extract output of R3STEP procedure |
| extractResiduals | Extract residual matrices |
| extractResiduals_1section | Helper subfunction to extract one section of OUTPUT:... |
| extractSampstat | Helper function to extract the sample statistics from Mplus... |
| extractSummaries_1file | Extract the summaries from one file |
| extractSummaries_1plan | Worker function used in extractSummaries_1section |
| extractSummaries_1section | Extract summary information for one section from Mplus output |
| extractTech1 | Extract Technical 1 matrix from Mplus |
| extractTech10 | Extract Technical 10 matrix from Mplus |
| extractTech12 | Extract Technical 12 from Mplus |
| extractTech15 | Extract Technical 15 from Mplus |
| extractTech3 | Extract Technical 3 matrix from Mplus |
| extractTech4 | Extract Technical 4 matrix from Mplus |
| extractTech7 | Extract Technical 7 from Mplus |
| extractTech8 | Extract Technical 8 from Mplus |
| extractTech9 | Extract Technical 9 matrix from Mplus |
| extractValue | Extract values from Mplus output An internal function used by... |
| extractWarningsErrors_1file | Extract warnings and errors from 1 mplus file |
| filter_inp_filelist | helper function to filter a set of Mplus input files based on... |
| finalizeInitCollection | Finalize Init Collection |
| friendlyGregexpr | Friendly Regular Expression |
| get_efa_nfactors | Small helper function to obtain number of factors for an EFA... |
| getInitTags | Get Initial Tags |
| get_job_status | This function checks the status of one or more compute jobs |
| getMultilineSection | Extract a multiline section from Mplus output |
| getOutFileList | Get Output File List |
| get_results | Extract Mplus results |
| getSavedata_Bparams | Load the draws from the Bayesian model posterior distribution... |
| getSavedata_Data | Load an analysis dataset from the SAVEDATA command into an R... |
| getSavedata_Fileinfo | Read Variable Names, Formats, and Widths from data generated... |
| getSavedata_readRawFile | Internal function to load the draws from the Bayesian model... |
| getSection | Get an Output Section |
| graphModel | Create a graphic model from Mplus |
| htmlout | Read in Mplus Output File from HTML on the Mplus Website |
| HTMLSummaryTable | Create an HTML file containing a summary table of Mplus model... |
| isEmpty | Check whether a useable function argument was provided |
| LatexSummaryTable | Display summary table of Mplus model statistics in separate... |
| lcademo | Latent Class Analysis Demonstration |
| l_getSavedata_Bparams | Internal function to load the draws from the Bayesian model... |
| l_getSavedata_Fileinfo | local function that does the work of getSaveData_Fileinfo |
| local_job_status | helper function to get job status on local *nix-based machine |
| long2LGMM | Long data to wide latent growth mixture model |
| lookupSimpleTags | Simple tag lookup |
| lookupTech1Parameter | Lookup the matrix element for a give parameter number |
| lookupValue | Lookup values |
| matrixExtract | Reconstruct matrix from multi-line text output |
| minutes_to_dhms | helper function to convert a number of minutes into a... |
| mixtureSummaryTable | Create a summary table of Mplus mixture models |
| mplus_as.numeric | Convert Mplus Number to Numeric |
| MplusAutomation | Automating Mplus Model Estimation and Interpretation |
| MplusAutomationUtils | Clean data and calculate the md5 hash |
| mplusAvailable | Check whether Mplus can be found |
| mplusGLM | Function to fit GLMs in Mplus |
| mplusModel | Create an mplusModel object for a given model |
| mplusModeler | Create, run, and read Mplus models. |
| mplusModel_r6 | An R6 class for a single Mplus model |
| mplusObject | Create an Mplus model object |
| mplusRcov | Create Mplus code for various residual covariance structures. |
| mplus.traceplot | Plot the samples for each MCMC chain as a function of... |
| OS | Functions to identify the operating system |
| paramExtract | Extract parameters from a data frame of Mplus estimates |
| parseCatOutput | Parse Categorical Output |
| parseMplus | Check Mplus code for missing semicolons or too long lines. |
| parseMplusSyntax | Convert an Mplus syntax string into a parsed list |
| parseTags | Parses tags in the body section |
| plotGrowthMixtures | Plot growth mixture models |
| plotLTA | Plot latent transition model |
| plotMixtureDensities | Create density plots for mixture models |
| plotMixtures | Create latent profile plots |
| plot.mplusObject | Plot coefficients for an mplusObject |
| prepareMplusData | Create tab-delimited file and Mplus input syntax from R... |
| prepareMplusData_Mat | Prepare Mplus Data Matrix |
| print.MplusRstructure | Print an Mplus Residual Structure object |
| processConditionalTags | Process Conditional Tags |
| processInit | Process the Init Section |
| readModels | Read Parameters, Summary Statistics, and Savedata from Mplus... |
| recurseReplace | Recursive replace |
| replaceBodyTags | Replace Body Tags |
| replaceInitTags | Replace Init Tags |
| rmVarWarnings | Remove variable name length warnings from Mplus output file |
| runModels | Run Mplus Models |
| runModels_Interactive | Run Mplus Models Using Graphical Interface |
| separateHyphens | Separate Hyphenated Variable Strings |
| showSummaryTable | Display summary table of Mplus model statistics in separate... |
| slurm_job_status | check the status of jobs submitted on a SLURM cluster |
| splitDFByRow | Split a data frame into a list by rows |
| splitFilePath | Split File and Path into Separate Parts |
| submitModels | Submit Mplus models to a high-performance cluster scheduler |
| subsetModelList | Subset a list of Mplus model results |
| summary.mplusObject | Summarize an mplusObject |
| summary.mplus_submission_df | summary function for submission from 'submitModels' |
| SummaryTable | Create a summary table of Mplus model statistics |
| testBParamCompoundConstraint | Test inequality-constrained hypothesis for two or more... |
| testBParamConstraint | Test inequality-constrained hypothesis for two parameters... |
| torque_job_status | helper function to get the status of jobs on a TORQUE cluster |
| trainLGMM | Train a variety of latent growth mixture model |
| trimSpace | Trim White Space |
| unlabeledMatrixExtract | Reconstruct matrix from unlabeled multi-line text output |
| updateCurrentValues | Updates current values |
| update.mplusObject | Update an Mplus model object |
| validate_dhms | helper function to validate format of walltime inputs for HPC... |
