KASPar_process: KASPar_process
In michaelway/KASParClean: Process KASPar data removing conflicts, negatives, duplicates, unknowns
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/KASPar_process.R
Description
Processes raw roche LightCycler 480 endpoint read genotype data and converts this into a csv file
and removes unknown, duplicate and . It also produces a log file and a PDF containing scatter
plots for error checking.
Usage
1
KASPar_process(KASPar, output = TRUE)
Arguments
KASPar:
string. The name of the input LightCycler480 .txt file
output:
logical. Do you want an output .pdf .log and .clean.csv file or to just print qc info to the console?
Value
If output is true, a log file, a PDF and a CSV with the cleaned data
Author(s)
Michael Way
Examples
1
KASPar_process(KASPar="examples/SNP1.txt", output = FALSE)
michaelway/KASParClean documentation built on May 22, 2019, 9:52 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/KASPar_process.R
Description
Processes raw roche LightCycler 480 endpoint read genotype data and converts this into a csv file and removes unknown, duplicate and . It also produces a log file and a PDF containing scatter plots for error checking.
Usage
1 | KASPar_process(KASPar, output = TRUE)
|
Arguments
KASPar: |
string. The name of the input LightCycler480 .txt file |
output: |
logical. Do you want an output .pdf .log and .clean.csv file or to just print qc info to the console? |
Value
If output is true, a log file, a PDF and a CSV with the cleaned data
Author(s)
Michael Way
Examples
1 | KASPar_process(KASPar="examples/SNP1.txt", output = FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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