API for michaelwitting/CompoundDb
Creating and using (Chemical) Compound Annotation Databases
| Global functions | |
|---|---|
| $<-,MsBackendCompDb-method | Man page |
| .add_join_tables | Source code |
| .add_mz_range_column | Source code |
| .annotate_adduct_mz | Source code |
| .build_query_CompDb | Source code |
| .collapse_spectrum_df | Source code |
| .compound_id_from_mona_sdf | Source code |
| .db_file_from_metadata | Source code |
| .dbconn | Source code |
| .deserialize_mz_intensity | Source code |
| .expand_spectrum_df | Source code |
| .extract_field_from_string | Source code |
| .extract_spectra_mona_sdf | Source code |
| .fetch_data | Source code |
| .field | Source code |
| .filter_class | Source code |
| .from | Source code |
| .get_property | Source code |
| .guess_sdf_source | Source code |
| .has_msms_spectra | Source code |
| .has_mz | Source code |
| .import_hmdb_ms_ms_spectrum | Source code |
| .import_lipidblast | Source code |
| .insert_msms_spectra | Source code |
| .is_sdf_filename | Source code |
| .join_tables | Source code |
| .metadata | Source code |
| .metadata_value | Source code |
| .onLoad | Source code |
| .order | Source code |
| .peaks | Source code |
| .ppm | Source code |
| .prefix_columns | Source code |
| .process_filter | Source code |
| .reduce_tables | Source code |
| .reduce_tables_start_from | Source code |
| .select | Source code |
| .simple_extract_compounds_sdf | Source code |
| .sql_condition | Source code |
| .sql_logicOp | Source code |
| .sql_value | Source code |
| .supported_filters | Source code |
| .tables | Source code |
| .validCompDb | Source code |
| .valid_compound | Source code |
| .valid_metadata | Source code |
| .valid_ms_backend_dbcon | Source code |
| .valid_msms_spectrum | Source code |
| .valid_spectra_data_required_columns | Source code |
| .where | Source code |
| .where_filter | Source code |
| CompDb | Man page Source code |
| CompDb-class | Man page |
| CompoundIdFilter | Man page Source code |
| CompoundIdFilter-class | Man page |
| CompoundNameFilter | Man page Source code |
| CompoundNameFilter-class | Man page |
| Filter-classes | Man page |
| MsBackendCompDb | Man page Source code |
| MsBackendCompDb-class | Man page |
| MsmsMzRangeMaxFilter | Man page Source code |
| MsmsMzRangeMaxFilter-class | Man page |
| MsmsMzRangeMinFilter | Man page Source code |
| MsmsMzRangeMinFilter-class | Man page |
| Spectra,CompDb-method | Man page |
| adducts | Man page Source code |
| annotateMz | Man page |
| annotateMz,DataFrameOrEquivalent,DataFrameOrEquivalent-method | Man page |
| annotateMz,numeric,DataFrameOrEquivalent-method | Man page |
| annotateMz,numericOrDataFrameOrEquivalent,CompDb-method | Man page |
| as.list,MsBackendCompDb-method | Man page |
| asDataFrame,MsBackendCompDb-method | Man page |
| asDataFrame<-,MsBackendCompDb-method | Man page |
| backendInitialize,MsBackendCompDb-method | Man page |
| compound_tbl_lipidblast | Man page Source code |
| compound_tbl_sdf | Man page Source code |
| compounds | Man page Source code |
| createCompDb | Man page Source code |
| createCompDbPackage | Man page Source code |
| dbconn,CompDb-method | Man page |
| expandMzIntensity | Man page Source code |
| hasMsMsSpectra | Man page Source code |
| import_mona_sdf | Man page Source code |
| intensity,MsBackendCompDb-method | Man page |
| intensity<-,MsBackendCompDb-method | Man page |
| make_metadata | Man page Source code |
| mass2mz | Man page Source code |
| matchWithPpm | Man page Source code |
| msms_spectra_hmdb | Man page Source code |
| msms_spectra_mona | Man page Source code |
| mz,MsBackendCompDb-method | Man page |
| mz2mass | Man page Source code |
| mz<-,MsBackendCompDb-method | Man page |
| show | Man page |
| show,CompDb-method | Man page |
| show,MsBackendCompDb-method | Man page |
| src_compdb | Man page Source code |
| supportedFilters,CompDb-method | Man page |
| tables | Man page Source code |
