The package can be installed with
install.packages(c("BiocManager", "remotes")) BiocManager::install("EuracBiomedicalResearch/CompoundDb")
In case there are missing package dependencies, run the code below first:
#' Install also Jan Stanstrup's commonMZ package devtools::install_github("stanstrup/commonMZ")
This package provides functionality to create and use compound databases generated from (mostly publicly) available resources such as HMDB, ChEBI and PubChem.
Contributions are welcome, but should follow certain guidelines:
1) Open an issue.
2) Create a new branch (internal collaborator) or fork the repository (external
3) Add your code (following loosly Bioconductor's coding
4) Ensure the package passes
R CMD build and
R CMD check.
5) Make a pull request.
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