bracken_clean: Clean Bracken
In michaelwoodworth/MEP_r: Microbiome Enrichment Program Analytic Tools
Description
Usage
Arguments
Examples
View source: R/bracken_clean.R
Description
This function accepts a bracken summary file from the bracken python script
and returns a cleaned data frame for further analyses.
Usage
1
bracken_clean(data, min_abund = 0.01, frac_or_num = "frac")
Arguments
data
input data (can be piped from readR etc.)
min_abund
option adjust minimum abundance (default 0.01)
Examples
1
bracken_clean(data = "bracken_s")
michaelwoodworth/MEP_r documentation built on Jan. 18, 2021, 6:28 p.m.
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Description Usage Arguments Examples
View source: R/bracken_clean.R
Description
This function accepts a bracken summary file from the bracken python script and returns a cleaned data frame for further analyses.
Usage
1 | bracken_clean(data, min_abund = 0.01, frac_or_num = "frac")
|
Arguments
data |
input data (can be piped from readR etc.) |
min_abund |
option adjust minimum abundance (default 0.01) |
Examples
1 | bracken_clean(data = "bracken_s")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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