get_AMPs: Get putative antimicrobial peptides
In michbur/AmpGram: Prediction of Antimicrobial Peptides
get_AMPs R Documentation
Get putative antimicrobial peptides
Description
Function gets sequences recognized as antimicrobial peptides and returns as data.frame.
Usage
get_AMPs(x)
Arguments
x
AmpGram predictions for a single protein
Value
a data.frame with sequences recognized as antimicrobial peptides (AMPs).
It consists of two columns:
- putative_AMP
amino acid sequence of a 10-mer (subsequence of an analyzed peptide)
predicted as AMP.
- prob
Probability with which a 10-mer is recognized as AMP.
Examples
data(AmpGram_predictions)
get_AMPs(AmpGram_predictions[[2]])
michbur/AmpGram documentation built on March 22, 2022, 12:13 a.m.
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| get_AMPs | R Documentation |
Get putative antimicrobial peptides
Description
Function gets sequences recognized as antimicrobial peptides and returns as data.frame.
Usage
get_AMPs(x)
Arguments
x |
AmpGram predictions for a single protein |
Value
a data.frame with sequences recognized as antimicrobial peptides (AMPs). It consists of two columns:
- putative_AMP
amino acid sequence of a 10-mer (subsequence of an analyzed peptide) predicted as AMP.
- prob
Probability with which a 10-mer is recognized as AMP.
Examples
data(AmpGram_predictions) get_AMPs(AmpGram_predictions[[2]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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