plot-eff: Plot 'eff' objects

Description Usage Arguments Details Author(s) References See Also

Description

Draws diagnostic plots of the amplification efficiency.

Usage

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## S4 method for signature 'eff'
plot(x, xlab = "log10(Concentration)", 
                     ylab = "Cq", main = "Efficiency Plot", 
                     trend = TRUE, res.fit = "topright", CI = FALSE, 
                     level = 0.95, type = "p", pch = 19, 
                     er.length = 0.05, col = "black")

Arguments

x

is a eff object.

xlab

a title for the x axis.

ylab

a title for the y axis.

main

an overall title for the plot.

trend

Setting the option trend = TRUE shows the linear regression line in the plot.

res.fit

If res.fit sets where the results (goodness of fit, amplification efficiency, correlation ) of the linear regression line in the plot should be plotted. Accepts the same location keywords as legend

.

CI

Setting the option CI = TRUE shows the confidence interval lines in the plot.

level

Tolerance/confidence level.

type

is a graphical parameter setting the plot use lines, points or both (see plot).

pch

is a graphical parameter used to define the symbol used in the plot.

er.length

length is a graphical parameter used to define the length of the error bar used in the plot.

col

col is a graphical parameter used to define the color of the points on the plot.

Details

The plot being a result of this function is built from three subplots.

Author(s)

Stefan Roediger, Michal Burdukiewicz

References

Roediger S, Boehm A, Schimke I. Surface Melting Curve Analysis with R. The R Journal 2013;5:37–53.

See Also

eff


michbur/chipPCR documentation built on Feb. 28, 2021, 5:57 p.m.