read_uniprot: Read data from UniProt database
In michbur/signalHsmm: Predict Presence of Signal Peptides
Description
Usage
Arguments
Value
Description
Read data saved in UniProt original flat text format.
Usage
1
read_uniprot(connection, ft_names, kwds = NULL)
Arguments
connection
a connection to UniProt data in text format.
ft_names
a character vector of UuniProt features to be extracted, for example
"signal", "transit", "propep". The case is not matched.
kwds
a NULL or character vector of keywords (not UniProt keywords,
but words of interest, that may occur in the protein description).
Value
a list of sequences. Each element has a class SeqFastaAA.
Attributes OS and OC represents respectively OS and OC fields in the
protein description. A value of each feature is preserved as an attribute named
after the feature.
michbur/signalHsmm documentation built on May 10, 2020, 2:58 p.m.
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Description Usage Arguments Value
Description
Read data saved in UniProt original flat text format.
Usage
1 | read_uniprot(connection, ft_names, kwds = NULL)
|
Arguments
connection |
a |
ft_names |
a character vector of UuniProt features to be extracted, for example
|
kwds |
a |
Value
a list of sequences. Each element has a class SeqFastaAA.
Attributes OS and OC represents respectively OS and OC fields in the
protein description. A value of each feature is preserved as an attribute named
after the feature.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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