ZymoTrainingSet: ZymoTrainingSet
In microsud/chkMocks: Compare Mock Community Samples in Microbiome Sequencing Studies
ZymoTrainingSet R Documentation
ZymoTrainingSet
Description
Contains ZymoTrainingSet compatible with DECIPHER::IdTaxa.
Usage
data(ZymoTrainingSet)
Format
TrainingSet object
Details
ZymoTrainingSet contains 16S sequences of
ZymoBIOMICS Microbial Community Standard. ZymoBIOMIC mock community
standards consisting of
eight bacterial species Pseudomonas.aeruginosa,
Escherichia coli, Salmonella.enterica,
Lactobacillus.fermentum, Enterococcus.faecalis,
Staphylococcus.aureus, Listeria.monocytogenes,
Bacillus.subtilis and two fungal species
Saccharomyces.cerevisiae and Cryptococcus.neoformans.
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
References
ZymoBIOMICS™ Microbial Community Standard.
Catalog No. D6300.
https://files.zymoresearch.com/protocols/_d6300_zymobiomics_microbial_community_standard.pdf
Shetty SA 2021
microsud/chkMocks documentation built on July 1, 2023, 9:23 p.m.
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| ZymoTrainingSet | R Documentation |
ZymoTrainingSet
Description
Contains ZymoTrainingSet compatible with DECIPHER::IdTaxa.
Usage
data(ZymoTrainingSet)
Format
TrainingSet object
Details
ZymoTrainingSet contains 16S sequences of ZymoBIOMICS Microbial Community Standard. ZymoBIOMIC mock community standards consisting of eight bacterial species Pseudomonas.aeruginosa, Escherichia coli, Salmonella.enterica, Lactobacillus.fermentum, Enterococcus.faecalis, Staphylococcus.aureus, Listeria.monocytogenes, Bacillus.subtilis and two fungal species Saccharomyces.cerevisiae and Cryptococcus.neoformans.
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
References
ZymoBIOMICS™ Microbial Community Standard. Catalog No. D6300. https://files.zymoresearch.com/protocols/_d6300_zymobiomics_microbial_community_standard.pdf
Shetty SA 2021
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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