Man pages for miepstei/MetabolonR
Loads, Manipulates on Metabolon Datasets
| AllMetsPresent | Filters a data frame in wide format that contains metabolites... |
| AllMetsPresentLong | Filters a data frame in long format that contains metabolites... |
| AsNumericFactor | Converts a factor with numeric character levels into a factor... |
| AssignLabelsToGroups | Convenience function for the median normalisation. |
| CalculateMetPCA | Calculates a scaled and centred PCA analysis of a Metabolon... |
| CCMNNormaliseDataset | Normalises a Metabolon dataset using the Cross-contribution... |
| CoVar | Calculates the percentage Coefficent of Variation from a... |
| CreateOrClean | creates or cleans a given directory (non recursively). If the... |
| FilterMissingMets | Filters a metabolite count data frame in long format.... |
| HasNA | Calculates the number of NA entries in a vector x |
| hello | Hello, World! |
| LoadMetabolonData | Load Metabolon datasets from preconstructed sample file,... |
| MeanCentred | Removes the mean from a numeric vector, removes NAs |
| MedianNormaliseDataset | Performs Metabolon median normalisation, typically by 'Run... |
| metaboliteDataWide | Test Sample Infomation |
| metaboliteInfo | Test Metabolite Infomation |
| MetDataLongToWide | Convenience function for transforming a Long count Data Frame... |
| MetDataWideToLong | Convenience function for transforming a Wide count Data Frame... |
| NOMISNormaliseDataset | Normalises a Metabolon dataset using the "Normalization using... |
| RenameColumns | Renames column names in a dataframe, so each column name... |
| sampleInfo | Test Sample Infomation |
| TransformExp10Mets | Transforms the metabolite count in long format by... |
| TransformLog10Mets | Transforms the metabolite count in long format by taking... |
| TransformZscoreMets | Calculates the z-score of each metabolite count within each... |
| VolumeNormaliseDataset | Adjust the metabolite counts for differing volumes in... |
