FilterMissingMets: Filters a metabolite count data frame in long format....
In miepstei/MetabolonR: Loads, Manipulates on Metabolon Datasets
Description
Usage
Arguments
Value
Examples
Description
Filters a metabolite count data frame in long format. Removes metabolites missing in samples at a greater
frequency than a threshold set by the user
Usage
1
FilterMissingMets(cMetDataLong, proportion)
Arguments
cMetDataLong
a count matrix of Metabolon data in Long format
cMetDataLong
proportion of metabolite frequency to filter out
Value
a Data Frame which has metabolites present at a lower frequency than 'proportion' removed
Examples
1
2
allMetsPresentLong <- FilterMissingMets(cMetDataLong, 0.2)
removes all metabolites missing in more than 20% of the samples
miepstei/MetabolonR documentation built on May 22, 2019, 10:50 p.m.
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Description Usage Arguments Value Examples
Description
Filters a metabolite count data frame in long format. Removes metabolites missing in samples at a greater frequency than a threshold set by the user
Usage
1 | FilterMissingMets(cMetDataLong, proportion)
|
Arguments
cMetDataLong |
a count matrix of Metabolon data in Long format |
cMetDataLong |
proportion of metabolite frequency to filter out |
Value
a Data Frame which has metabolites present at a lower frequency than 'proportion' removed
Examples
1 2 | allMetsPresentLong <- FilterMissingMets(cMetDataLong, 0.2)
removes all metabolites missing in more than 20% of the samples
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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