Description Usage Arguments Value Examples
View source: R/count_transcripts.R
determine how many transcripts are annotated in a FASTA or GTF file
1 2 | count_transcripts(f, fasta = TRUE, identifier = "transcript_id",
attrsep = "; ")
|
f |
character, path to a file in FASTA or GTF format |
fasta |
TRUE if |
identifier |
if |
attrsep |
if |
Number of transcripts annotated in f
1 2 | fastapath = system.file("extdata", "chr22.fa", package="polyester")
count_transcripts(fastapath) #918
|
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