README.md

tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis

Description of methods and analysis described in:

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream statistical analysis packages such as edgeR, DESeq2, limma-voom. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

See examples in the vignette.

Notes:



mikelove/tximport documentation built on March 28, 2024, 5:05 p.m.